ZFIN ID: ZDB-GENE-020228-3
Gene Name: spalt-like transcription factor 1b
Gene Symbol: sall1b    Nomenclature History

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Gene Type: protein_coding_gene
Location: Chr: 25 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in Townes-Brocks syndrome and middle lobe syndrome. Orthologous to human SALL1 (spalt like transcription factor 1).
Genome Resources: Alliance (1),  Gene:100149526 (1),  Ensembl(GRCz11):ENSDARG00000075891 (2)
GENE EXPRESSION
All Expression Data: Fig. 2 from Camp et al., 2003
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa3306 Point Mutation Unknown Premature Stop ENU
sa32545 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44357 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sall1b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Townes-Brocks syndrome Alliance Townes-Brocks branchiootorenal-like syndrome 107480
    Townes-Brocks syndrome 1 107480
    DISEASE ASSOCIATED WITH sall1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sall1b-201 (1)    Ensembl 4574
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sall1b No data available
    MARKER RELATIONSHIPS
    sall1b Contained in: [BAC] CH73-364F24 (1)
    sall1b Contains: [SSLP] z13578 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_005163189 (1) 4496 nt
    Genomic GenBank:CU469312 (1) 89370 nt
    Select Tool
    Polypeptide UniProtKB:F8W3Q2 (1) 1203 aa
    Sequence Information (all 11)
    ORTHOLOGY for sall1b ( Chr: 25 )
    CITATIONS (20)