Gene
hmga1a
- ID
- ZDB-GENE-010502-1
- Name
- high mobility group AT-hook 1a
- Symbol
- hmga1a Nomenclature History
- Previous Names
-
- hmga1
- hmgiy
- wu:fb12b06
- wu:fb18f11
- wu:fc19f01
- wu:fi38b05
- zgc:85677
- Type
- protein_coding_gene
- Location
- Chr: 23 Mapping Details/Browsers
- Description
- Predicted to enable transcription coregulator activity. Acts upstream of or within regulation of RNA splicing. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in DEL; central nervous system; heart; margin; and otic vesicle. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human HMGA1 (high mobility group AT-hook 1).
- Genome Resources
- Note
- None
- Comparative Information
- All Expression Data
- 6 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:113942 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
type 2 diabetes mellitus | Alliance | {Type 2 diabetes mellitus, susceptibility to} | 125853 |
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Length | AT hook, DNA-binding motif | High mobility group protein HMGA | HMG-I/HMG-Y, DNA-binding, conserved site |
---|---|---|---|---|
UniProtKB:Q6NV11
|
101 | |||
UniProtKB:E9QD31
|
100 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
hmga1a-201
(1)
|
Ensembl | 2,593 nt | ||
mRNA |
hmga1a-202
(1)
|
Ensembl | 733 nt | ||
mRNA |
hmga1a-203
(1)
|
Ensembl | 814 nt | ||
mRNA |
hmga1a-205
(1)
|
Ensembl | 782 nt | ||
mRNA |
hmga1a-206
(1)
|
Ensembl | 964 nt | ||
mRNA |
hmga1a-207
(1)
|
Ensembl | 405 nt | ||
mRNA |
hmga1a-208
(1)
|
Ensembl | 2,416 nt | ||
ncRNA |
ottdart00000062042
(1)
|
Ensembl | 745 nt |
Interactions and Pathways
No data available
Plasmids
No data available