ZFIN is now using GRCz12tu for Genomic Data

Gene

robo2

ID

ZDB-GENE-001019-1

Name

roundabout, axon guidance receptor, homolog 2 (Drosophila)

Symbol

robo2 Nomenclature History

Previous Names

ast
astray
sb:eu937
unp1881
zmp:0000000549 (1)

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable identical protein binding activity. Involved in negative regulation of synapse assembly. Acts upstream of or within several processes, including axon development; regulation of extent of cell growth; and sensory perception of touch. Predicted to be located in cell surface. Is expressed in several structures, including digestive system; dorsal fin; nervous system; spleen; and trigeminal placode. Human ortholog(s) of this gene implicated in vesicoureteral reflux. Orthologous to human ROBO2 (roundabout guidance receptor 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

36 figures from 24 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu937 (5 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 30 figures from 14 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With robo2 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
vesicoureteral reflux	Alliance	Vesicoureteral reflux 2	610878

Associated With robo2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Domain	IPR013106	Immunoglobulin V-set domain
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M9QC44	InterPro	1544
UniProtKB:A0A8M9QPX8	InterPro	1575
UniProtKB:A0A8M9QC41	InterPro	1591
UniProtKB:A0A8M9QHC4	InterPro	1586
UniProtKB:Q90Z70	InterPro	1513
UniProtKB:A0A8M6YUU1	InterPro	1591
UniProtKB:A0A8M9QPY1	InterPro	1582
UniProtKB:A0A8M9Q0I3	InterPro	1595
UniProtKB:A0A8M9QLH7	InterPro	1540
UniProtKB:A0A8M9QLH5	InterPro	1571
UniProtKB:A0A8M9QHC8	InterPro	1533
UniProtKB:A0A8M9Q0I8	InterPro	1553
UniProtKB:A0AC58HBG3	InterPro	1540
UniProtKB:A0AC58HBG6	InterPro	1520
UniProtKB:A0AC58HBG8	InterPro	1500
UniProtKB:A0AC58HBG9	InterPro	1467
UniProtKB:A0AC58HBH0	InterPro	1474
UniProtKB:A0AC58HBH1	InterPro	1617
UniProtKB:A0AC58HBH2	InterPro	1525
UniProtKB:A0AC58HBH3	InterPro	1516
UniProtKB:A0AC58HBH5	InterPro	1509
UniProtKB:A0AC58HBJ9	InterPro	1458
UniProtKB:A0A8M1PBT0	InterPro	1513

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ottdart00000001997 (1)	Havana	226 nt	Select Tool ZFIN BLAST
mRNA	robo2-201 (1) Ensembl	Ensembl	4,326 nt	Select Tool ZFIN BLAST
mRNA	robo2-202 (1) Ensembl	Ensembl	4,161 nt	Select Tool ZFIN BLAST
mRNA	robo2-203 (1) Ensembl	Ensembl	552 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance

Citations