Gene

smx5

ID
ZDB-GENE-000616-10
Name
smx5
Symbol
smx5 Nomenclature History
Previous Names
  • wu:fe48h10
  • zgc:101795
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Description
Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to Lsm1-7-Pat1 complex; P-body; and nucleus. Orthologous to human LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With smx5 Human Ortholog
No data available
Associated With smx5 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001163 Sm domain, eukaryotic/archaea-type
Domain IPR047575 Sm domain
Family IPR016654 U6 snRNA-associated Sm-like protein LSm2
Homologous_superfamily IPR010920 LSM domain superfamily
Domain Details Per Protein
Protein Length LSM domain superfamily Sm domain Sm domain, eukaryotic/archaea-type U6 snRNA-associated Sm-like protein LSm2
UniProtKB:Q5RKP8 95
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA smx5-201 (1) Havana 752 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations