Gene

spon1b

ID

ZDB-GENE-000427-10

Name

spondin 1b

Symbol

spon1b Nomenclature History

Previous Names

cb1051 (1)
F-spondin2

Type

protein_coding_gene

Location

Chr: 25 Mapping Details/Browsers

Description

Predicted to be involved in cell adhesion. Localizes to extracellular region. Is expressed in several structures, including axis; central nervous system; eye; mesoderm; and pancreatic system. Orthologous to human SPON1 (spondin 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

26 figures from 14 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb1051 (24 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With spon1b Human Ortholog

No data available

Associated With spon1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR002861	Reeler domain
Domain	IPR009465	Spondin, N-terminal
Domain	IPR044004	Spondin-like TSP1 domain
Family	IPR051418	Spondin/Thrombospondin type-1 domain-containing
Homologous_superfamily	IPR036383	Thrombospondin type-1 (TSP1) repeat superfamily
Homologous_superfamily	IPR038678	Spondin, N-terminal domain superfamily
Homologous_superfamily	IPR042307	Reeler domain superfamily
Repeat	IPR000884	Thrombospondin type-1 (TSP1) repeat

Domain Details Per Protein

Protein	Length	Reeler domain	Reeler domain superfamily	Spondin-like TSP1 domain	Spondin, N-terminal	Spondin, N-terminal domain superfamily	Spondin/Thrombospondin type-1 domain-containing	Thrombospondin type-1 (TSP1) repeat	Thrombospondin type-1 (TSP1) repeat superfamily
UniProtKB:O42114 InterPro	803
UniProtKB:F1R2Z9 InterPro	804

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	spon1b-201 (1) Ensembl	Ensembl	2,587 nt	Select Tool ZFIN BLAST
mRNA	spon1b-202 (1) Ensembl	Ensembl	3,705 nt	Select Tool
mRNA	spon1b-203 (1) Ensembl	Ensembl	3,570 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations