Fig 8
a. Phylogenic tree of UPM2146 show that the phylogenomic GBDP trees inferred using D6 formula and yielding average support of 58%, The numbers above branches are GBDP pseudo-bootstrap support values from 100 replications. The branch lengths of the resulting VICTOR tree are scaled in terms of D6 formula used. b. The evolution of UPM2146 of putative phage-encoded peptidoglycan binding protein had been drawn using phylogenic tree analysis using 1000 bootstrap, using the maximum likelihood (ML) method based on the Jones-Taylor-Thornton (JTT) model, the tree with the highest log likelihood (-1805.44) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial tree(s) for the heuristic search were obtained by applying the Neighbor-Joining method to a matrix of pairwise distances estimated using a JTT model. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 22 amino acid sequences. All positions containing gaps and missing data were eliminated (complete deletion option). There were a total of 261 positions in the final dataset. Evolutionary analyses were conducted in MEGA X [ |