FIGURE

Fig. 5

ID

ZDB-FIG-140828-6

Publication

Castro-González et al., 2014 - A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis

Other Figures

All Figure Page

Back to All Figure Page

Fig. 5

Assessing gene coexpression and cell genetic profiles.

(a) Matrix displaying the percentage of cells coexpressing any given gene pair at developmental stages from 4 to 6.3 hpf (see also Fig. S21). Gene pairs were ordered according to the similarity of the evolution of their patterns over time (Fig. S23). (b) Spatial WPGMA clustering at 6.3 hpf of the 1,194 positive cells according to the similarity of their gene expression profiles. (c) Volume rendering, (d) lateral view and (e) coronal view of template nuclei at 6.3 hpf. Nuclei were classified according to their gene expression profiles, which revealed 5 distinct morphogenetic domains: dorsal hypoblast (yellow), marginal dorsal epiblast (blue), dorsal epiblast (white), paraxial and lateral blastoderm margin (red), forerunners and dorsal YSL (green). White arrowheads indicate the limits of the imaged analyzed embryos. Upper panel, sagittal section, lower panel equatorial section passing through the embryonic shield. Scale bar 100 μm.

Expression Data

Expression Detail

Antibody Labeling

Phenotype Data

Phenotype Detail

Acknowledgments

This image is the copyrighted work of the attributed author or publisher, and ZFIN has permission only to display this image to its users. Additional permissions should be obtained from the applicable author or publisher of the image. Full text @ PLoS Comput. Biol.