Genomic Feature
b1436
- ID
- ZDB-ALT-230209-3
- Name
- b1436
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Grimes Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 16: 16758227 - 16758760 (GRCz11) (1) Details
- Nucleotide change
- TCGATACCGATCCAGACTCATAGCGGTGAGGGTAAAGATGCTTGCGTGCATTGTTAACAAGTCCAGACTGAGTAGGAGTCGACAGCCAAGTTCGCCAAATGCCCAGTCAGATGCCAGACTGTCATACACAATGAAAGGGGCAGTGGACAGGTACACCAAATCTGCTAAAGCCAGACTCAGAACCTGCAGGTGAAGAGAGGAAGAGGAGGAGGAAGATGTGGGAGAGGAAGATGGAGAAAAAGAGGGAGAGAAAGAAGGGGAGGAAGAACCGAGGCAGGACAGACTGTAACAACACATAGGAGCAGTATGCCGCCTTCTTGACATTCTGCGGCGGCGAAGGAGAAGTACTAGGGTGTACAAGTTGCCCAGAATACCCAACAGAGAAAGGAGGGATAGGAAAAAGCAGAAGAGAGCAGTGGAAGCTACACTTGGGGATGGGGAGAGAGAGGGTGATGATGAGGGAAAGGAAAGGTTAGTGAAAAAAGGAAAGGTGTATGAAGGTGAAGGGGAAGAGAAGAGGGAAGTAGAACCAGG/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 534 bp deleted in Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CCATAAGTCAATCCTGTGAGGATGCGATTTATGGTCACCTGTGTCCCAACCGGCACCACACGAAGAACCTCAGGCTGGTACAACGGTAGAAGCTGCCAGATCCAAAATGGAAGGAAACAAGCCCAGAATGTCAGCACAATACCCAGGATAAGGAGCAGAACTTTTGGGCGAGGTGCACGGGGTGGGTAGGCGTTACCCCCTCCAGCCCAAGCTGGTTGAGTTTGAGATACCCAGTACAGTCTCCCCAAAGCTGCATACAAAGCTCCAATTGCCAGTCCTGGGCCTAGGATACTGGTGCAGAAGAGGATACTGAGGTAGGCTTTCGAACTCTGCTCATCCCAGGCAGGAACACACAACTTTCCTTCATGGTTCTCTCCATCTTCAAGGTGCAAAGTAATCATCATGGGCAAACTGAGAGCGATGGCAAAGCCCCAGGCCAAAGCGACTCTTAAAAGTCCAGAGGATGGTGTGGATGTGGTTGCCAATGGATCGGCCACAGC
TCGATACCGATCCAGACTCATAGCGGTGAGGGTAAAGATGCTTGCGTGCATTGTTAACAAGTCCAGACTGAGTAGGAGTCGACAGCCAAGTTCGCCAAATGCCCAGTCAGATGCCAGACTGTCATACACAATGAAAGGGGCAGTGGACAGGTACACCAAATCTGCTAAAGCCAGACTCAGAACCTGCAGGTGAAGAGAGGAAGAGGAGGAGGAAGATGTGGGAGAGGAAGATGGAGAAAAAGAGGGAGAGAAAGAAGGGGAGGAAGAACCGAGGCAGGACAGACTGTAACAACACATAGGAGCAGTATGCCGCCTTCTTGACATTCTGCGGCGGCGAAGGAGAAGTACTAGGGTGTACAAGTTGCCCAGAATACCCAACAGAGAAAGGAGGGATAGGAAAAAGCAGAAGAGAGCAGTGGAAGCTACACTTGGGGATGGGGAGAGAGAGGGTGATGATGAGGGAAAGGAAAGGTTAGTGAAAAAAGGAAAGGTGTATGAAGGTGAAGGGGAAGAGAAGAGGGAAGTAGAACCAGG/- TATATCCATTTGTCCTGGAGAGCAAGAGTCTCAAAATGAGTAACCTTCCGATGAAATAAGGAGGCCAATGCAACGAGTGT ... - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| uts2r3b1436/b1436 (AB) | Homozygous | ♀+/- ♂+/- | 2 figures  from Bearce et al., 2022 | ||
| uts2r3b1436/b1436; sspout24Tg (AB) | Complex | Figure 5. from Bearce et al., 2022 | Figure 5. from Bearce et al., 2022 |
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Supplemental Information
- Genotyping protocol
- None