Genomic Feature
as401
- ID
- ZDB-ALT-221115-2
- Name
- as401
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Ruey-Bing Yang Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 4: 9008670 - 9008688 (GRCz11) (1) Details
- Nucleotide change
- TATTTATGAGGAGGAAAAG/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 19 bp deleted in Exon 1 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
GCTGACAATCTGTTTTTATTGTTTGTCTCATTATTGACTTTTCCAGGCATTCATTATGGAGAGACACAATGCGTATTGACGGTAGTGGAGGAGTGAGGGGTCGATAAGCCCCCCGCACCGACCCCATCAGGGCGGCTCATGTTCCTATAGACCCCAAGGAAATCTGAAAAGACACCAGCAAAAGCTCTCCTTGAGGAATATCACGCGTAAATAAAACCAAACCGGCGCGTTCAAATGCGCATTTAATGCACTAATGACAGGGCAAAGTAGGACTAAATTGTTTTTCTAAATGAACGCAGCTGGCTTAATCAGACAGAGTGCATTGCAGTTTCGCTAAAATCACATGCAAAAAAAGAAAGCACTGACTTACAGTCCTTACAGACTTAAATTTCAGGTAATAAAAGTTTAACAAAAAATAATATAAGGTTTGTTAAAATACATTTTTAAAAAGACAGATGAAGACTTACCTGGGACTCCAACATTTCCCATGACATCTAAAG
TATTTATGAGGAGGAAAAG/- CAAACAGACTTCCCAGGAGAAGCAGGCAGGACCCATGGTTAGAGGCTGTGAGTGAATGGGTCTCTCCAGTTGTGCGTTTCTTTGATAAGCAGCCTTTCTGCTGCTGCTGGCAGAGCGAGCACCACAGCTCGAGACTCCGGACGCCGCTGATTGGTTTGCGCACATTTGAGGAGGAGATGGAGGTGGAAGGCAGGGGGGTAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGGGGGGAAGACTATACAGTGCTGAACATGTATGAGTAGACCCCTTACAAATCTCTATTTTAAATTCATGTTTTTAATAGGAAATATCATATTTGTGCATATGCATTGGATTAGTCAGCACTGAAGCCAAATCTGGAGCTTATCTAACAAAATTACTTAGGACAACGGTTCAAATCAGTACACCCAAATGTATATATTAGGGGAAAATATTAAACAAAAATAATAAAAAAAG - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| scube1as401/as401 (AB) | Homozygous | Unknown | Fig. S3 from Tsao et al., 2021 | Fig. S2 from Tsao et al., 2021 | |
| scube1as401/as401; ci5Tg; y7Tg (AB) | Complex | 3 figures from Tsao et al., 2021 | |||
| scube1as401/as401; sd2Tg; y1Tg (AB) | Complex | Fig. 2 from Tsao et al., 2021 | |||
| scube1as401/as401; scube2as403/as403 (AB) | Complex | Fig. S3 from Tsao et al., 2021 | |||
| scube1as401/as401; scube2as403/as403; ci5Tg; y7Tg (AB) | Complex | 3 figures from Tsao et al., 2021 | |||
| scube1as401/as401; scube2as403/as403; sd2Tg; y1Tg (AB) | Complex | Fig. 2 from Tsao et al., 2021 | |||
| scube1as401/as401; scube3as405/as405; sd2Tg; y1Tg (AB) | Complex | Fig. 2 from Tsao et al., 2021 |
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Supplemental Information
- Genotyping protocol
- None