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ZIRC
ZFIN ID: ZDB-GENE-050302-78
Gene Name: signal peptide, CUB domain, EGF-like 1
Gene Symbol: scube1    Nomenclature History

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Previous Name: im:7427863

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Involved in cell surface receptor signaling pathway; muscle fiber development; and primitive hemopoiesis. Localizes to the plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).
Genome Resources: Alliance (1),  Gene:797832 (1),  Ensembl(GRCz11):ENSDARG00000063097 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20206 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • y255Et Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-scube1 N/A 2
    MO2-scube1 N/A 1
    MO3-scube1 N/A 2
    DISEASE ASSOCIATED WITH scube1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scube1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process BMP signaling pathway (more)
    Cellular Component plasma membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 11)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scube1-201 (1)    Ensembl 4038
    ncRNA scube1-002 (1)    Ensembl 1068
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM scube1 No data available
    MARKER RELATIONSHIPS
    scube1 Contained in: [BAC] CH73-375O18 (1) (order this), DKEY-48P11 (1) (order this)
    scube1 Encodes: [EST] IMAGE:7427863
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001260500 (1) 3594 bp
    Genomic GenBank:CT573393 (1) 189027 bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IN49 (1) 1067 aa
    Sequence Clusters UniGene:38738 (1)
    Sequence Information (all 21)
    ORTHOLOGY for scube1 ( Chr: 4 )
    CITATIONS (21)