Genomic Feature

syd5

ID
ZDB-ALT-220908-1
Name
syd5
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Oehlers Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 2
Variants
Variant Type
Small Deletion
Variant Location
Chr 2: 23701816 - 23701823 (GRCz11) (1) Details
Nucleotide change
GACCCGAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
8 bp deleted (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TAAAGGAAAATAAATAAATGAATAAAAGCAGCTTAAAAAAACATTTTAAGGTTAATATTATTATCCCCATCAAGCAATATTTTTTTCAGTTGTCTTTACAGAGCTTTACACTTTTCAGTTGTCATTGTTATACAATGACTTGTCTAATTACACTAACTTAACTAACGTTAGTTAACTTTTTGTTTTCTCTAGTGTAGACAAAGTGGCTGAGGAGGAATCATTTTTCCTCAGTTCTGGACTGAGACTACCGGTAGGTGGCGTGACGTGGCATAATTTTGGTCGCCTCCAAGATTTTTTGACACGAGGAAGAACGTTTTCCGCCCAAGGCGGGGTCACCATCCCTGTTGGCAAAGTTTGGCTGTTGGGACTGAGAGCGGTCGGTGAGATCAGCACAAGTAAATCGAGTATAAATACAGATCGGTCGTTTTCCAGCGCTCGCCGCCGTGTAAGCGTGCAGTGGGGCGTCCGGCTGTCGTGATCTGACCGCAGTCATGTCCGAG
GACCCGAG/- CTCTCAACCTTGGTCCATCGACAAGGATGACTATGAGCTACAGGAGGTGATCGGTGAGCTAATCCACCACACATCAGCATCTCAATCACACGAGTGACAGAAAACGGAGAGTAATGCGGAGGTGTTTATATCGGTGTGGCCCTGATGATCTGTGTTCGTTCAGATCTCCATCAGTGATTGAGTCATCGCGCCTGGAAGATGTTCAGATATGTTAGCCATGCTAACTAGCCTGACGACATGCCAGCAGAGTGTAATTCTTGCGGTCAATGGCTGATTTACTGCTCAATTTGGCGATTTTAGCCTGCTGTATATGACACGTACGGTATTGTTACTGCTGATAAAAAGACGATGTTGCTTCATGAATCGTTAATGTAACGCTAAACAGGCTGTTATTTGGATAAAAGTTTGGTGTATAATTAGAACTCTGACTGCTTAACTTGAAATGAGAGCTGTTTGCTGTGTCCTGGAATATTTGTGTTGGTCTTTCAACTCCCGTTGTC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
oxsr1asyd5/syd5Homozygous♀+/- ♂+/-Fig. 1 with image from Hortle et al., 2022
oxsr1asyd5/+Heterozygous♀+/- ♂+/-Fig. 1 with image from Hortle et al., 2022
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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