Genomic Feature

gf2

ID
ZDB-ALT-220711-3
Name
gf2
Synonyms
  • pex2-typeC (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Takashima Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 24
Variants
Variant Type
Small Deletion
Variant Location
Chr 24: 23213160 - 23213169 (GRCz11) (1) Details
Nucleotide change
GGCCCAAGCC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
10 bp deleted from position 23213160 to 23213169 in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
AAAGTATTGAAAGAAAGAAAAAAGATTTTGAGATGTTTCCTGCAATTTTCATAAGCCAATTTATTTCAGATATTGTCCAAATCCCATCCTAAGCTAAGAGGTGGTCACCACAGCCCCTGGCTCTCATTTTTTAACCATTGCATTTAAAGAGATAAACCCAGGCCGATACAAACGCATTCCATGAAAAATTGCCAAACGTCACAGTTCTTAGATCCCTTATAAAAAGCCGTCAAAGTAAAGTAGTTCCACATAGCGGATGTTTACTGCCTTTCCAAGCCTGTGCTGTTGGGATAATCTCCTGTGATGTGATTTGTCCTCGAACTGAATCTCGAGAGGGAACAGCATAAGACCTCCTGTGCCTCTGCCCTGCACAGCTAAAAGGGAATTTAGGATGGGTTTTACATGTGAAAAGTGATTTCAACTCAAATGCAAAAATGCATAACCATTTCCTTCTTCTGCTTGTAGCTGGAGCTGGAGGTGACAAGCCTTTCGCCAAGGCC
GGCCCAAGCC/- CTTTATCTCGGGTTTTGAGAATCAGTCAGCTGGATGCTTTTGAACTGGATGGTGCACTGGAACAGCTTGTTTGGTCACAGTTCACCCAATGTTTCCAGCATTTTAAACCTGGGATCTTAACCCCTGTGGAACCAGAACTCAAAGCGCTTCTCCAGCTCCTCCTGTGGAGGTTCACCATCTACTCCAACAGTGCCACCGTGGGCCAGTCACTGCTCAACATTCGGTACAAGAATGCACTGATCCCGGGACAGAAATACCGGCCCATGAGTCGGCCACAGAAGTTTTGGTTTGCTTTGCTGACGGTGGGTGAAAAGTGGTTTAGAGAGCGCTCCCATAGCTTGTTTCTCAACCACCCAGCAGAGTCCAACGCTCGCAAAGCCCGTAAAGTACTCAGCATCTTGTTGGGCCTCACCAAAGCGGCCAGCCTGGTCAACTTCCTACTTTTCCTCCAAAGAGGAACCTTTCCGACCCTTACCGAAAGATTGTTGGGAGTGCAGCCA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
pex2gf2/gf2 (RW)Homozygous♀+/- ♂+/-5 figures from Takashima et al., 20212 figures from Takashima et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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