Genomic Feature
s3038
- ID
- ZDB-ALT-220401-7
- Name
- s3038
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with CRISPR
- Lab of Origin
- Baraban Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 5: 28973291 - 28973302 (GRCz11) (1) Details
- Nucleotide change
- GCACTCAGGATG/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 12 bp deleted in Exon 1 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CCTGTAAAATAACGGGTTATCATACTGTAGATGGCTGTCTTACATACATATTCATTTAAATAATCCAAACGAGCAAAGCATCTCTGAATGGCCACTTAAACGCGGCAGGATAACAAGTCGATGTCTCCCTCTAGTGGGCACCAAGTGGTCTTTTCGCGCATCTTACAGGCGCACCTATTATTAAACAGATTGCAACCATTCTCACCCAAACGTCACTATTTTCATCACGTTAATTTCATATCCTATGCAAATTCGTTGAGTTCACCTTGTTAAAGCATATGCTCCAAAACCACTTCAGGCGTGAAACATGATGAAATCTGCGTAGAAAGCTGAGCTTCATAGATGCACAAATGTGTGTATGTTTACAAGACACGCTGCATATGTCAACAAAGGAGCTGCGGAGGCGTGTGCTGGGATTAGCCATCGACGCAAGAGCCACATCCCATTTACACCAACTGTAGATCCGAGCGCGCGCACTCCGAGTCCGGCGGCGAGAGCGA
GCACTCAGGATG/- GCATCTCTGGGACTCAAGGCGATTGTCGGAGAAAGTAAGACATGTTTTCCTTAAGTTTATGTATGGCAGATATACGGCTGTTTTTGGACCGGACATGTTGAAAATTTGTAACGTGTGGAGTTAGTGCCATTTTCATTGACATTTGTACTTTGTGTAGTACTGTACATGTTAGCATGAAGGGTGTGTTAATGTATTATCAAATATTAGTTGGCCCATACTCACAAACAGTAGCCTATAAACCTCATACAACAATACAGCTCTACTTAAATTCTTATATTGAAATTGCTTAATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATAATGAGTGTCAGGCGCTACACATTACATAGAATAACTGATATTGCTAAAAGCACACAAGCATTTGAGATAGGCTACACACTAATCTGTGTAGTCCTGTGGGATTAGGGATCCAGATATGAGGGGCGGCTCATAG - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| stxbp1bs3038/s3038 | Homozygous | ♀+/- ♂+/- | 2 figures  from Griffin et al., 2021 |
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Supplemental Information
- Genotyping protocol
- None