Genomic Feature

hg140

ID
ZDB-ALT-220329-7
Name
hg140
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Burgess Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 22: 37350553 - 37353169 (GRCz11) (1) Details
Nucleotide change
ACGCAGGCGCACGAATTTAAAAGGTGTCATTTTAAAAACACTCGTTCTTGAGACATTATCCCAACTAACATGCCTGTATTTATGCCACTACACTTCAACCGGCTCAAGCTGAATGTGAATTAGAAAATGGAGGCCCGTCAATCATCACAAATAGGTAGTTTTGTTTCGGCTGTTGTCATTACATCACTCTGAACAAAAGCACGACAAAAGCCGACTACACTGACCATCTGAGTTGTAAGGATTTGTGTTATTAGGATTCACTCCATGAAGAGTGACAGGGGGAGAGGGTTTATTCAGCACAGCCTCCTTCAAAATAACAAGAGCACGGGCGCTTTGATTAAATCCAATTATTTGTATAATAACTAAAAACACAAGGAGCTATTTTTTGCCCAACACATCTATTCTCCGAGAATTACGATTAAAAGCTGATCATTCTTCCTGCAGAAGTTGACTTTACTCGACAAGAGTGGAACTAATATACAAACAGGCTTAATGTCAGGAGGAAAAAATGCCTATTTTATATTTTTCTTTTCCACGAAAGCATGTTTTATGTTTCAACAGCGTCCTCTTGCGGTCACACTGATACAAACTCGTGCTCCCTCAACATTTTCCACATGCACGCAGTTATTTTGGATTGCTTTATAAATAAGTTTTAGTCGCTGTACTTTTTATATAATTAGCGGGAGATAAAAAATAATAATTACACAAAACAAACAACATAAATTCCAACAATAATACTTATTTTTTTAGGGTTGCATGCATGAATAAATAAACACTCTCTCAGCGTCGTTTTAAACTTGTAAATCGACTAACAACGTGAGAATTTCAACACGACGGCAATGCAGCATGCGCCTTTATAATGCAAGTCTAAACTGCGCGCTCTCGATCTGCATTTGAGTGCCTTAATCTGCTTATGGAAATGTGTAGAACAGCGGGGAATCTCTAACATCCCAGAGTGGCTCCTGCTTTGGCTAAATTGTTAATTGTCACAGTTCTTCACAATAGGTGTATCAGCTCCTGAAAAGATTCTTAATATTAAACTAAAATATATATATGTAACAACTAATTTTATATATGCAAAAAAAAAATGTTTTTAACAAACATAAATTAACAGGCACGATAAAACAAATGTAACAAACAAAGATTTGGCATGTAAGAAAAATTATTCGTATTTTATAATATATGTCATTTATATATATATTTTTTTATCAACACATTTTTTAAACTAAAGCGATATAATAAACGAATAAATTAAAATAACTAGCCTACAACAAAAAAGAAATGTGTCATTCACCCGTGCCCTCATGTTTGCGCTCAATAATTAAACGCAAATTCAGCGGCGCATCTTTACCTATATATGCATTTATAAATTAGCTCGAGAATTACACAAAACCTTCTTTATAATTATTCAAGCATTTAATCCTAAAATTGGGAGATACAAATTACTACATATTAAGAGTGAGACGGGGGATAAAGGGGAAAGACATGGAGATGTGTCCACTAGGGGCCGCACTGACTGCAGATCAAAATTTGACTCATAACCCATTTCATACAGGCTGCTTCTGAAAAATGATAACGGTTTCCACTTTATTTAGATGTTTTTAACAGTAATATATAAAAATAGCGAAGACTGGATTAGCATTTTTTATCATTAAAACAAAATAGCGAATTTAGCAATTATATAAAAAGTTAGACATAATTTAAAACAAGCCTGTCATTTTGACATTTCTAATTATTATTAATCTTTGTAATAAACGCCGCTTTAAAATTATAATTCGCATACATTTTAAGCACATTTGTGCGTATTAATTGCACTTAATTTCAACTCGTTTTAATTAATATCATCAAAGTAAGTAAATGTGAAAAACAAACGTTAGTTTGTTTGTATTTTCCAAAGTTTGCCAAACAGCCGCGAACACTCAACAAGTACGATTTTTACTATAGTACATGCATCCAATAAAACCAATAACATACAGGCTAGTGGATCGCTTGAATAAATAATGCAACTTCCAAAGTTTTAATATCAAATCAACCCCACGCTGTTTACATCTCTAATTAAATCCAGTCCCAGCAGACAGACACGCACAAACGAGCCGCACACCCAAAAGTTACTCACACTCACTTTGACTGACACATCCAAAAGTTCCCCGCGCCTGCCGGCCGGATCCTCCCATGCGCGCCCAGCGAGGAGTCGCTTTTTCCGGCCGCGCAGTTTTCCGGCAGCCGCTCTCATGATCCATAGCGTCCAGTCGCTCCGTGTGCCCGCTCAGAGTGCTCTCAGCGCGGCTGCTCTCACCCGCCTCAGCCCCTCTGCAGCTCCACGCCATCTGAAAAGGGGCCGATTGAAAAAGAAGAAGAATGCATCAAGAACAACAAAAGTCACTTATAGCAAGTCTACAAAAACCCCCACCAAACATAATGAGAAGGAGAAAGCTTTATATTTTTTCACCGGGTATTCAGAGATAATTTGAAGCCATTGTTTCTGGCACAGATGGCTCTTTTTAATACAATAACACTGTGAGCTCCACCAACAATAAAAATCTAAAGCCTTCTCCTGAATAACAGTTTTTTGTTCGCTCTTGTAAAGGGCCAACAAAAGCAGTCGTGAGGTAATGGG/CGAGCAGGCGCACGAATTTAGGTAATGGCTTTTTTTTTGAGGTAATGG
Variant Notes
Deletion 2568 bp that is -1955 bp (upstream the TSS) of sox2
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
48 bp inserted / 2617 bp deleted in 5' UTR (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GCTGACCAATCAGAGCGCGTCTGCTCCCTCGGTTTGCATAAAGGGGCGGGGTTACGGACGGTCAGCAGTGCAGCGCAGAGCCACAGGCAGTGGCTGTGAGTGTGTGTGTGTGTGTGTGTGTTTATGAGAGAGCTAAAGTGAGAATATTTCACACAAACCATTTTCCAATCAAACTCTGTATGATCTTAAGATTCTAAATAAACATTTAAAGTTTTATTATTAGTATTATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTTATCGCTTTGTTTTTAGTGTAAGTTTGCGTATTCAACACATCAGTTAAACTCTTAAAGCACTGAAAATAAAATAAAGATTTTTTTAAGTTAAAACGGCAAGCTCATAATATTAAAAACTTCCAAAATAATGCGTGAATAAGCCGAATAAAATATAGCTATTTATTATTTAGTTCGCATTTAAAAATGAGCAGCGGCTTGTTTTATTAACGAATACAATAAAGTAA
ACGCAGGCGCACGAATTTAAAAGGTGTCATTTTAAAAACACTCGTTCTTGAGACATTATCCCAACTAACATGCCTGTATTTATGCCACTACACTTCAACCGGCTCAAGCTGAATGTGAATTAGAAAATGGAGGCCCGTCAATCATCACAAATAGGTAGTTTTGTTTCGGCTGTTGTCATTACATCACTCTGAACAAAAGCACGACAAAAGCCGACTACACTGACCATCTGAGTTGTAAGGATTTGTGTTATTAGGATTCACTCCATGAAGAGTGACAGGGGGAGAGGGTTTATTCAGCACAGCCTCCTTCAAAATAACAAGAGCACGGGCGCTTTGATTAAATCCAATTATTTGTATAATAACTAAAAACACAAGGAGCTATTTTTTGCCCAACACATCTATTCTCCGAGAATTACGATTAAAAGCTGATCATTCTTCCTGCAGAAGTTGACTTTACTCGACAAGAGTGGAACTAATATACAAACAGGCTTAATGTCAGGAGGAAAAAATGCCTATTTTATATTTTTCTTTTCCACGAAAGCATGTTTTATGTTTCAACAGCGTCCTCTTGCGGTCACACTGATACAAACTCGTGCTCCCTCAACATTTTCCACATGCACGCAGTTATTTTGGATTGCTTTATAAATAAGTTTTAGTCGCTGTACTTTTTATATAATTAGCGGGAGATAAAAAATAATAATTACACAAAACAAACAACATAAATTCCAACAATAATACTTATTTTTTTAGGGTTGCATGCATGAATAAATAAACACTCTCTCAGCGTCGTTTTAAACTTGTAAATCGACTAACAACGTGAGAATTTCAACACGACGGCAATGCAGCATGCGCCTTTATAATGCAAGTCTAAACTGCGCGCTCTCGATCTGCATTTGAGTGCCTTAATCTGCTTATGGAAATGTGTAGAACAGCGGGGAATCTCTAACATCCCAGAGTGGCTCCTGCTTTGGCTAAATTGTTAATTGTCACAGTTCTTCACAATAGGTGTATCAGCTCCTGAAAAGATTCTTAATATTAAACTAAAATATATATATGTAACAACTAATTTTATATATGCAAAAAAAAAATGTTTTTAACAAACATAAATTAACAGGCACGATAAAACAAATGTAACAAACAAAGATTTGGCATGTAAGAAAAATTATTCGTATTTTATAATATATGTCATTTATATATATATTTTTTTATCAACACATTTTTTAAACTAAAGCGATATAATAAACGAATAAATTAAAATAACTAGCCTACAACAAAAAAGAAATGTGTCATTCACCCGTGCCCTCATGTTTGCGCTCAATAATTAAACGCAAATTCAGCGGCGCATCTTTACCTATATATGCATTTATAAATTAGCTCGAGAATTACACAAAACCTTCTTTATAATTATTCAAGCATTTAATCCTAAAATTGGGAGATACAAATTACTACATATTAAGAGTGAGACGGGGGATAAAGGGGAAAGACATGGAGATGTGTCCACTAGGGGCCGCACTGACTGCAGATCAAAATTTGACTCATAACCCATTTCATACAGGCTGCTTCTGAAAAATGATAACGGTTTCCACTTTATTTAGATGTTTTTAACAGTAATATATAAAAATAGCGAAGACTGGATTAGCATTTTTTATCATTAAAACAAAATAGCGAATTTAGCAATTATATAAAAAGTTAGACATAATTTAAAACAAGCCTGTCATTTTGACATTTCTAATTATTATTAATCTTTGTAATAAACGCCGCTTTAAAATTATAATTCGCATACATTTTAAGCACATTTGTGCGTATTAATTGCACTTAATTTCAACTCGTTTTAATTAATATCATCAAAGTAAGTAAATGTGAAAAACAAACGTTAGTTTGTTTGTATTTTCCAAAGTTTGCCAAACAGCCGCGAACACTCAACAAGTACGATTTTTACTATAGTACATGCATCCAATAAAACCAATAACATACAGGCTAGTGGATCGCTTGAATAAATAATGCAACTTCCAAAGTTTTAATATCAAATCAACCCCACGCTGTTTACATCTCTAATTAAATCCAGTCCCAGCAGACAGACACGCACAAACGAGCCGCACACCCAAAAGTTACTCACACTCACTTTGACTGACACATCCAAAAGTTCCCCGCGCCTGCCGGCCGGATCCTCCCATGCGCGCCCAGCGAGGAGTCGCTTTTTCCGGCCGCGCAGTTTTCCGGCAGCCGCTCTCATGATCCATAGCGTCCAGTCGCTCCGTGTGCCCGCTCAGAGTGCTCTCAGCGCGGCTGCTCTCACCCGCCTCAGCCCCTCTGCAGCTCCACGCCATCTGAAAAGGGGCCGATTGAAAAAGAAGAAGAATGCATCAAGAACAACAAAAGTCACTTATAGCAAGTCTACAAAAACCCCCACCAAACATAATGAGAAGGAGAAAGCTTTATATTTTTTCACCGGGTATTCAGAGATAATTTGAAGCCATTGTTTCTGGCACAGATGGCTCTTTTTAATACAATAACACTGTGAGCTCCACCAACAATAAAAATCTAAAGCCTTCTCCTGAATAACAGTTTTTTGTTCGCTCTTGTAAAGGGCCAACAAAAGCAGTCGTGAGGTAATGGG/CGAGCAGGCGCACGAATTTAGGTAATGGCTTTTTTTTTGAGGTAATGG CTGGCTTTTTTCAAACGCAAAGAATGGCTATTTGATAAAGATTTTTTACTTCAGAAAATACACTGCCATGTCATCTGTAT  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.