Genomic Feature
sud124c
- ID
- ZDB-ALT-220207-3
- Name
- sud124c
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Akinori Kawamura Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 11: 2172462 - 2172469 (GRCz11) (1) Details
- Nucleotide change
- GCTTATCC/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 8 bp deleted in Exon 1 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
TGCAAGTTAACTTGACATTTCATTTAAGGATGATGCTCTCAGTTGCATTGATCTAAGATGAAATACGTCTGATTTGATGACAAAATAATAATAAAGTGCTAAACAAAATATTTAATCACGCACATAAAAGAAAAACAATCGTTTAAAGCAGTTCAGGAGGCGTTTAACAAGAATATATTAAAATAAGTTGTTAATATTTTAAGGTTAATACTTCTTTTTGTAAAAAGAGAAAAAAACAGTGGGTGGCACCTTCTGCGACTCATTCTCAAGCAGTGTCATGTGACCATACAGCCAATGGGGCGCAGCCTGGTTTCCTTATACGTTAAATGTCAGATTTGCTATAAACTACAAACTCTTAGCCGGGCCCGCCGAAATGGGCGAGCATAATCTCTTTAATCCGGGGTTTGTTGGACAATTGGTTAACATTAATGCAAGAGATGCATTTTACCTCTCCAATTTCCGTGCGTCGGGGGGACAGCTAGCAGGACTGCAAACCCTCC
GCTTATCC/- AGAAGAGATAATGTCTGCTCTTTGCCTTGGAACCCATCGGAAGCATGCAGTGGATACCCACAATCTCATATTAGCGGCCCCGTTACCCTAAACCACACATACAATCAATCATGCGACATTACTCGGCAGGAAGACAACAAATGTTTTTATAGTGACAGTGCATGCGCCACCAGCGGCGGTGGTGACAATAACAGTACCAATCTTATATCAAAAGAGAAAGCATTGGATAACTCATCTGTATCCATTACTGCAGAGAACGGACAGAACAATCTGAACGGAATGGACAACGGAGGAAGTTATTCAAAATATGACTGCCTGACACCTGCAGAACAGCCAATCCCAAATCCTCGTTTGTGTCGGTCTCTTGAATCGGTTTCTGGCTGTTCGTTCATAAACGAGGGGGCCAAGACCTCATCAGGCATCACGCATTCACTAACATCCCCTGACATCCAAACAAGTGTTGCAGCACTAAACGGAGGTGAGTTTTTTTCTATTATATA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| hoxc11bsud124b/sud124b; hoxc12bsud124c/sud124c; hoxc13bsud124d/sud124d; hoxc6bsud124a/sud124a (RW) | Complex | 6 figures  from Yamada et al., 2021 | Fig. 5 from Yamada et al., 2021 |
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Supplemental Information
- Genotyping protocol
- None
- Adachi, U., Koita, R., Seto, A., Maeno, A., Ishizu, A., Oikawa, S., Tani, T., Ishizaka, M., Yamada, K., Satoh, K., Nakazawa, H., Furudate, H., Kawakami, K., Iwanami, N., Matsuda, M., Kawamura, A. (2024) Teleost Hox code defines regional identities competent for the formation of dorsal and anal fins. Proceedings of the National Academy of Sciences of the United States of America. 121:e2403809121e2403809121
- Yamada, K., Maeno, A., Araki, S., Kikuchi, M., Suzuki, M., Ishizaka, M., Satoh, K., Akama, K., Kawabe, Y., Suzuki, K., Kobayashi, D., Hamano, N., Kawamura, A. (2021) An atlas of seven zebrafish hox cluster mutants provides insights into sub/neofunctionalization of vertebrate Hox clusters. Development (Cambridge, England). 148(11):
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