Genomic Feature

hg119

ID
ZDB-ALT-220105-4
Name
hg119
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 6
Variants
Variant Type
Small Deletion
Variant Location
Chr 6: 28897572 - 28897573 (GRCz11) (1) Details
Nucleotide change
CC/-
Variant Notes
Deletion 2 bp in exon 6, ENSDART00000127965.4 c.540_541delCC, p.Gln181Glyfs*11.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
2 bp deleted in Exon 6 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Amino Acid Substitution: Gln>Gly at position 181 (1)
Sequences
Flanking Sequence
TAATTAGGTTAACTAGGTGGGTTAGGGTAAATAGGCAAGTTACTGTATAACGATGGTTTGTTCTGTAGCTATTGAAAAAAAGCTTAAAGGGGCTAATAATTTTAACCTTAAAAGGGTGTTTAAAAAGTTAAAACTGCTTTTATTTTAGTTGAAATAAAACAAATAAGACTTTCTCTAGAATAAAAAAATATTATCAGACATACTGTGAAAATTCCCTTGCTTTGTTAAACAACATTTGGGAAATATTTAAAAATGTATGTATGTATGTATGTTTGTTTGCATGTATATATGTACGTGTTTTTATATATATTTATATAACTTCTCCAGTTTTTTAATGTTTATTTATTGGATTGGGAAAAAAGAAAGAATATTAATATTATTTGCTATGTGTAACCATGCTCGTCTCTCTGTTTTCTTTAGTACTCCACAGAGTTGAAGAAGCTGTACTGTCAGATTGCCAAAACATGTCCTATTCAAATCAAGGTCCTAACCAACCCACC
CC/- AGGGTGCAGTCATACGGGCCATGCCTGTCTATAAGAAAGCAGAGCATGTTACTGAGGTGGTCAAACGATGCCCGAACCACGAGCTGAGCAGAGAGTTCAATGACGGTATGCCACTCTTTTGTAATTGGACTGTATAAATTTGGCTAAACATTTTAATGTTCCATATAATTTACTGATTTTGTGTTCAATAGGCCAAATAGCCCCACCCAGTCACCTTATTAGGGTTGAGGGGAACAGTCACGCTCAATACGTGGAGGATTCCATTACTGGGCGTCAAAGTGTGCTGGTGCCTTATGAGCCCCCTCAGGTGAACACACACATACACACACCTACAATTACAGAAGAACTGCAGTGAACCTGGCTGTTCCTACAAACCCTGCACACCTGAAAGCACTCCCAGCAGATGTTAAAGCATTAGTTCAGTTCAAAATGAAAGTCTTTTACTCACCCTCATGACGTTTTAAGTAAACTCTTGTACATATACGGAACACACATGAATG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
tp63hg119/hg119 (NHGRI-1)Homozygous♀+/- ♂+/-FIGURE 4 with image from Simpson et al., 2023
tp63hg119/+ (NHGRI-1)Heterozygous♀+/- ♂+/-FIGURE 4 with image from Simpson et al., 2023
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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