Genomic Feature

hg129

ID
ZDB-ALT-220103-9
Name
hg129
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 11
Variants
Variant Type
Small Deletion
Variant Location
Chr 11: 12740749 - 12740759 (GRCz11) (1) Details
Nucleotide change
GGGTTTTTCCA/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
11 bp deleted in Exon 7 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
Amino Acid Substitution: Trp>Arg at position 167 (1)
Sequences
Flanking Sequence
CTTGTGAGGGAGGCTATTGAGCAACACTTTTCAAAAGGTTTCCATTAGTTAACGTTACATAATGTATTTACTAACATGAATGAACAATACATTTATTGCAGGATTTATCCAAAACTGAAAATTCTCTTGTTTACTTGTTCCACACTGGTTTGTTTCTTTTTTCTGTTGAACAAACACACAAAAAAAAGATTTTGAAGAAAGCTGAAAACCTTTTGACTTCCATAGTATGAAAACGTAATACTATGGAAGTCAATGGTTATAAGAATTCAGCTTTCTTCAAAATATTATTTTTTGTGTTCAACAGAATAAAGAACCACTTTCATTTTTGGGTGAACTATCCCTCATAATCCTGACCAGGAAATTTCATTTCGACTGTCAACACTTTGTGATATAGTCGTGTAATAAATAATTACCGGTCTCCAAATCTACAAGCACCAGTTTTTAGGAAGAATGGACAGTTTGCCTTGTCCTTTTCAGTTCCGTAATCCTTTGGAGCATCT
GGGTTTTTCCA/- GGGTCCCCCATTTTCCAGCTAAATGCAACAAAAGATGGCTTTTCATGAGAAGAGCAAATACAAAACTTGCATTTTTTTATCATAACAAGAATCAAGAAGTTACCTGACTCTCTGCTTGATCCAGCATTTTCTGTACTGCTTCCTATAAATGGTGCAAACATACACAGTATGGCGGGTGAAATTCTGTGGTGTGCAAGTACATGTCTGTTAGAACTGGTTAAGACAATCTGGCAGATCATTTGTACAGCATTTTATAATATTTTACAGCGAATATGTTCTCTGCTGTGGAATCAGTAAGCAATCTCATTACTACAAATGACATGAAAAGATACGTTCTTCATTGGGAGTCGACACTTGCTTCATATATAGCATTTTTGTGAATCTTAGTTAAGGAAACGAAGACAATATTTTGCATAAATTCACACAATGTACATATAAAACAGATATATGGCATGTGTGGGTGCATGTAAAATCATGATCAACAAGTCTTTATGTTTGAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
zrsr2hg129/hg129 (NHGRI-1)Homozygous♀+/- ♂+/-3 figures with image from Weinstein et al., 20224 figures with image from Weinstein et al., 2022
zrsr2hg129/+ (AB)Heterozygous♀+/- ♂+/-
zrsr2hg129/+ (NHGRI-1)Heterozygous♀+/- ♂+/-2 figures with image from Weinstein et al., 20224 figures with image from Weinstein et al., 2022
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Supplemental Information
Genotyping protocol
None
Citations