Genomic Feature
ecn4
- ID
- ZDB-ALT-210727-1
- Name
- ecn4
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Zhen-Yu Du Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 25: 2229387 - 2229429 (GRCz11) (1) Details
- Nucleotide change
- TCTGTGCTGGACAGTGCGCTGTTCGTCAGGGGAATGGAGGAGC/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 43 bp deleted (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AAATTGATTTAAACGAGATGATACTTGGATTTATAGGTTTTGTGGTTTGAAAAACTGAGTGTCTGTCGTTTATCTTATCTAAAGCTACAGCAAATACAAGTCATTTTTGGTTAGTTGGAACTTGTATTAACGCTAAAATTACATTTCAATGTATGCTTAAAAACTTATTAAAATAAATAGAGGCCAAATAGACATTAAAAAAACCTACTTAACATGACAAAAGAAAGTTCATTAAGTCTCTTGACTAACATAATACACTCATTGGCCACTTTATTAGGTACACCTTACTAGTACCAGGGTAAACCTCCTTTTGCCTTCAGATCTGCCTTAATCCTTCGTGGCATAGATTCAGCAGTGTACTGGAAATATTCCTCAGAGATTTTACTCCATTAATGCTTGAAATCTCTTTGTCAGGCTGATGTGTGACTGGCGCCCGGCCCCTGTCCGCCAGCATGGTAGACATGGAGAATCGCTACCGTCCTCCGTCTCCGCTGGACGAC
TCTGTGCTGGACAGTGCGCTGTTCGTCAGGGGAATGGAGGAGC/- TGCGGGACATCTCTCAGTCCATGGATGAAGACGCTCTCAGCAGCTTCGAGATGACCGAGAACCAGTCCGGTCTGGGCTCTGGATCCGAGAGCTCCACCGTGCTGGGTACGCAGATGCTCACACGCAAATACACACATTTTGCTTCTGTGTTTTAAGATTTGAGTGCGAGGCACCAGGTAATATACCGGGGCGGCCCGCCCATGTAAAGTCTGTGTGGGAAGCACATACAGCAAGCCTGTTCCTGGAGAACCACCTTCCTGCAGATTTCAGTTGCAACCCATAGATATATACACTAGATATCGCATAGGGACCCTGAGCATGCGTCAATAGCGCCGCCATATTTGTACAGTGCTCCCAGGACAAACGTCATTCAACCGCACTAGTCAAGACAGTGTTATTACGTGAAGATGCAGGACTTTAGCGCTGTCTACGGTGTAGTAACAAGCAAACAAAGACAACAAAGCACAAAGGCAGAACATTTCATAGGTAATATTAAGTTT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| pparabecn4/ecn4 | Homozygous | ♀+/- ♂+/- | 5 figures from Li et al., 2020 | 4 figures from Li et al., 2020 |
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Supplemental Information
- Genotyping protocol
- None
- Qiao, F., Tan, F., Li, L.Y., Lv, H.B., Chen, L., Du, Z.Y., Zhang, M.L. (2021) Alteration and the Function of Intestinal Microbiota in High-Fat-Diet- or Genetics-Induced Lipid Accumulation. Frontiers in microbiology. 12:741616
- Li, L.Y., Lv, H.B., Jiang, Z.Y., Qiao, F., Chen, L.Q., Zhang, M.L., Du, Z.Y. (2020) Peroxisomal proliferator-activated receptor α-b deficiency induces the reprogramming of nutrient metabolism in zebrafish. The Journal of physiology. 598(20):4537-4553
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