Genomic Feature
nii1
- ID
- ZDB-ALT-210402-1
- Name
- nii1
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Matsui Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 23: 24540943 - 24540952 (GRCz11) (1) Details
- Nucleotide change
- TCCTTTATGA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 10 bp deleted in Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
AGCATGAGAACACAATGAACTGTGAGTCTCACCTGCCTTCCTCAACCTCCTCTGTAATCACATCCACCACAAACTGCTGTCCATATCTGTCCTGTTATAATAAAAAAAAAAAAAACATGCTTCCTCATTATGGACAAGCAGTGAGCTCGTTTAAAAAGTTACATCAATACAAATGGATACAAGAATACAAGAAAGTAGCATAAAGACAAAGTACCTTTAATAATAAAACATCTGCCATTGAAATGGGACAGGACTTGCATCGGGCCAGTATGCCAATACGAGGACGCCATTTGAAGAGCACGAGCAGCAGGCCGACAGAAAATACTGCCCCAATTCGGCACAACCACACCTTCCAGCACACCCATCTGTACCCCTGAACGTCCTGAGAAACAAACCACATCACATTATAAAATGAACAGTGCTAAACTAACAATTTATTGTTCACAACATTCCAACACAGTACCATATGTGAGACGAGACTGAGCTCTGGGGGTCTTGGA
TCCTTTATGA/- GGGGTTCAGTGTCAGGGGAGGAGGATGCCCCATCCAGCCCCGGGACACAGTTCCCTGAAAGAAAATATCCTGATCAGCTGCGGTCCTTAAAACATTAGTGCAAACACAGTAAATAAACTTTGTAGCGCACACATCACTCCCGTTTGGTAAATACAAGATCGCTCTTCAGTATGTCTTTATGACATCAGTAGGGATCAACATGAGGTTTAATGTTGACGTTTAATAAAATACGTCCACGTTGTGAATAACCAGCTGGCAGATTAAGTTGACGTCTTGTGCTGTATGAAGTTAACAGATGCCATCAGATTTGTTTTGAATGATATGGTTTTATTTGTCAATATTAGCTTAACACATGATACTTAATTAGAAATATTAACAACAACAATAATAATAATAATAATAGTAAAATGCAATTATTTAGTACATATAGCTGGGTACAAATGAAAAATGCTTGTAAATGCATCTTTATTTCAAGTCAAACTTGAGGAACTTGAGATCCT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| atp13a2nii1/nii1 | Homozygous | Unknown | Fig. 2  from Nyuzuki et al., 2020 |
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Supplemental Information
- Genotyping protocol
- None