Genomic Feature
ja201
- ID
- ZDB-ALT-201008-6
- Name
- ja201
- Synonyms
-
- zf3127 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one insertion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Kikkawa lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Insertion
- Variant Location
- Chr 19: 40185948 - 40185949 (GRCz11) (1) Details
- Nucleotide change
- -/TCAGTCAGTCA
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 11 bp inserted (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
CTGTTTATTTACCAAAATAATAATACTAATAATAAATAAATCTATAGAGGAAAAATATCTATAAAGAAAGAGAATGTTTTGTTTCAATGGGGCCCCATACCTTTGCTTAGAGCCCCCCATATGACTTAAGTTTGCCCCTGTTTTTTAAGTGAAATATATTACAATCTTAAACCACTTATAACCACATTTAGATAGGCTTGAGGTTGTAATTACTTTAACAACTAGGGTAACTTTACCCAAACAGAAAGAAACTCATAAAAGTTTAGAACCACTTGAGTGTGAGCAAACGATGGAGAAGAAGTATTCATTTTGGGTCTGAACTATCCCTTTAAGTTTAAACCCCATTATAATGCTTGCATGGTGAACCTAATAAAGTGGCCGGTGAAAGTATATATGCAATAAATACTGCACTGCAAATTGTGATTGTTTTGTTGGTCGTTGTTCTCATTCAGAAACGCAACGTTACCTCTGTCCGTCATCATGTCGTCGGTCATCCCGAAA
-/TCAGTCAGTCA GTGTGGTGCAGTATATTTCTGAATTTGGCCCGGTCCACTCCAATAGTCGTCTTTCTCTCTGCCTGCTCTCCCAGCAGACTGTTGAACAGCCTTATCAGACACTCCGTCTCTGTTTTATTAACTACAGTATGACCACAGCTTAGTAACGTTAAATAACCTACCTTGTTTAGTATAGTTATTAGAGTTATAACTTTATAAAGCTGCAGGTTATTAACGAACTAAAAGCTGATATCTCAAACGCAAGTAGATACTCACAATGTTTGACTTGTCTGCATAAAGTCTCGGCGAGGTTTTGAATTAATTTTCTGTTCATCGCCGACATTTTCAGCATGTTTTACTCTCTTTTTAGTCTTTGGTTGAATGTTGCTGTGGAAACGTGTAATGTGGGCGGGGCAATGTTGTGACGAGCAAGCGCTGCATACACAAACCAGGATACATCGATTTAACGCATTTTAACTTGTCGAGCGTTTCCCTTCAGGGACGCATTTTGCAAATTTATGA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| clxnja201/ja201 | Homozygous | ♀+/- ♂+/- | Fig. 5  from Sasaki et al., 2019 |
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Supplemental Information
- Genotyping protocol
- None
- Morikawa, M., Yamaguchi, H., Kikkawa, M. (2024) Calaxin is a key factor for calcium-dependent waveform control in zebrafish sperm. Life science alliance. 7(9):
- Yamaguchi, H., Morikawa, M., Kikkawa, M. (2023) Calaxin stabilizes the docking of outer arm dyneins onto ciliary doublet microtubule in vertebrates. eLIFE. 12:
- Sasaki, K., Shiba, K., Nakamura, A., Kawano, N., Satouh, Y., Yamaguchi, H., Morikawa, M., Shibata, D., Yanase, R., Jokura, K., Nomura, M., Miyado, M., Takada, S., Ueno, H., Nonaka, S., Baba, T., Ikawa, M., Kikkawa, M., Miyado, K., Inaba, K. (2019) Calaxin is required for cilia-driven determination of vertebrate laterality. Communications biology. 2:226
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