Genomic Feature

jt3

ID
ZDB-ALT-200609-11
Name
jt3
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Mizushima Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 15
Variants
Variant Type
Small Deletion
Variant Location
Chr 15: 17358974 - 17358980 (GRCz11) (1) Details
Nucleotide change
GCCATTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted in Exon 6 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AGTACATAATATTTGTCTAGATATTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGTGAACAAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTAAATTGATGGTTTGTTCTGTAGACTATTGAAAACAAATATATATAGCTTAAAGGGGCTAATAATTTTGACCTTAAATGTTTTATAAAAAAAATAAAAACTGCTTTTATTCTAGCCAAATTAAAACAAATAAGACTTTCTCCAGAAAAAACAATATTATACATACTGTATATATATATAATTCACTTTCCAGTCCTAAACTGTAATTAGGTAATGGCTACTGCGTGTATTTATGATCTCCAAAACCTAAGGTAAACCTAATCATATCAAGTTTTTGAAGACTGGCAGAACCCAGAAGCTGTTGTTTCTCCTCAATCACGCTTCATCTCCATTATGCTCATCATTTGTACATGCGTGCGTGTTTTTAGGGTGCGGGCACA
GCCATTG/- GTGAGCTGCCTCCATACTTCATGGCTCGAGCGGCACGAATGTCTGGAGCAGATCCTGATGATGAGGATTATGAAGAATTCGAGGAGATGCTGGAGCATTCACAGAGCGCACAGGTCTGGAATCCATCTAAAAAAAAAAAACATGTCAAAGTAATGCTTCACCTCAGCAGGAGATGTTCAAAGCCCAACTAACAAGGCTTTATAAAGCTGACAGTGATTGAAGCTGATATTGTATCCTGTTTGGTGGGAGCCGTCCCAGTGTCTTATTCCCTTGAGTCCTCACTATTGTGGTTCACTCGTGTGGGTCACATGACTTCTTGGAAGGCTCTCCTCTGGTTTCCAGTAAAGTCTTTGAGCAGCAGTGACTCAGATGCAGAGCTTCCCTTTAATCACAGCCTCTTAGTGTCTAAGTGGACCCCACATGCTCTGCGCCTTCACTCTAAAACTTTTAATTGGTCATCTTTAATATGGCGGAGTGCACCGCGAGGTCTGCTGATTAAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
vmp1jt3/jt3 (RW)Homozygous♀+/- ♂+/-6 figures with image from Morishita et al., 2019
vmp1jt3/+ (RW)Heterozygous♀+/- ♂+/-Figure 2—figure supplement 1 with image from Morishita et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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