Genomic Feature
la222
- ID
- ZDB-ALT-200217-5
- Name
- la222
- Synonyms
-
- t2b (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Sagasti lab UCLA
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 15: 6360191 - 6360201 (GRCz11) (1) Details
- Nucleotide change
- GCAGAGATGCA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 11 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
AGAGACTGAAAAAAAACTCAAAATTATTTTAATTGATTTTACTTTTTTTGTATCTATTGTTGATGTGCAAAAGAAGACATATATATATATATATATATATATATATATATATATATATATAATTTATTTATTTTTTAATAACCATCTTAAAGCTATAATAACAACAACAAAATGGCATTACTGAATAAATATTTGAGCATTTTTTGTCTGGTTGGATTTTGATGTTGACTGACCGGCCTTAATGTGTAGATCTTGGCTCCTGATCTTTCCTGATGGGTTTTCCGCTGTGCAGTAGTACGTATTATCATTGATTAGGTTACTAAAGCTGGATGGCAGGAAGCCGTAGATCTGTAGCGTGCCATTGGGATGCACATGGCGGATGCCTGGTACATCGTAGATCTCCTCCCCGGTGGCGAGGTACCAGCGCAGCGTGGCAGGGGGCACAGCCGCGGCAGGACACGGCACCAGTGCCCCTGTGGTGCTGGAGAACACTACCTCTT
GCAGAGATGCA/- TTGACAAAATATAAGCTGGAACGTAGATCTTCACCGAAAACTGGAAAAAGACAAAATAAAAGTGCATTAATATGGATGAATGAGTGGAGACACGTTAATGTTGGCTGAATTTCTACACTGTGAAAACAAATATTGCTGTTTAAAGAGGCCTCTATTATGGGTTTTTGAAAAAAACTGTGTAACACAGCTCTAAGTAAAGTGAAATACCCAGCTGAGGCTTAAATATGAAAGTGCACCATGTTTAAAACTATTGATTCATCTATAAATGAGTCGACTCAGAAAAGTTTAAACGAATCCTCGGGGTAACGAATCTTTAGCTGTGTCGGCATGACGTCAATATGGAACCCAAGCTCTGACTACTTCGAAATTGTTGATAAGCCATGGTGGGTGATCCTCTCTGTTTCGCGCTGAACGCAGTTGACAAATCACAACAAACTGGGTCATCGGACCTATCAGCTCAGATTAGCATCGCTTTCAAGAAAGGAACAAATAAATCGCTG - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| dscambla222/la222 | Homozygous | ♀+/- ♂+/- | 4 figures from Julien et al., 2018 | ||
| dscambla222/+ | Heterozygous | ♀+/- ♂+/- | 2 figures from Julien et al., 2018 | ||
| dscambla222/la222; el377Tg; la218Et/+ | Complex | Fig. 3 from Julien et al., 2018 | |||
| dscambla222/la222; la218Et/+; nkuasgfp1aTg/+ | Complex | 2 figures from Julien et al., 2018 | Fig. 5 from Julien et al., 2018 | ||
| dscambla222/la222; la218Et/+; nkuasgfp1aTg/+; zf148Tg | Complex | Fig. 2 from Julien et al., 2018 | |||
| dscambla222/+; a129Tg; c264Tg; la218Et/+ | Complex | Fig. 3 from Julien et al., 2018 | |||
| dscambla222/+; c264Tg; la218Et/+ | Complex | ||||
| dscambla222/+; el377Tg; la218Et/+ | Complex | Fig. 3 from Julien et al., 2018 | |||
| dscambla222/+; la218Et/+; nkuasgfp1aTg/+ | Complex | Fig. 6 from Julien et al., 2018 | Fig. 1 from Julien et al., 2018 | ||
| dscambla222/+; la218Et/+; nkuasgfp1aTg/+; zf148Tg | Complex | 3 figures from Julien et al., 2018 |
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Supplemental Information
- Genotyping protocol
- None