Genomic Feature

um321

ID
ZDB-ALT-190718-4
Name
um321
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sagerström Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 21
Variants
Variant Type
Small Deletion
Variant Location
Chr 21: 19071393 - 19071415 (GRCz11) (1) Details
Nucleotide change
GGACCAGCATCCTCCACTTCACC/-
Variant Notes
Mutation leads to frameshift terminate at a premature stop codon upstream of  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
24 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
AAAGACAGCAGGTTGATGAAAATGTTTTATTATCTCCCAGATCTTCATGTGAACTACCCAGAAAGACTCTCTTTTTATTTATAGATTTCAAAAACACTCTTTTGAAAGGACGACGCTCTGTTGTATCATGCAAGATCTAAAAGAACAGAATGGATATTGGCCAGAGGAGATGAGTATGAAGCTCCAGTACAACTGATTGGGATTTTTTTAGAGAAATTACTTTTTTGGCTCCATATCGCAAGGTGTCTTTTGTTTATTTTTCGTTTCTCCTCTTCATTTAGTATTCTGCGTTTGTTTTCACGTTTTCCCGGGTCACTGTCCTGCTTCTTGCGCGATATTTAGTTAAAGTTGTAGTTTGTGTCTTGGTTATGTTAGCGGTGGGGCAAATGGACGGGTCTCGCCAAAGCGCTTTCCTACTCAATACCCCACCTTTAGCTGCTTTACACAGTATGACCGAGATGAAGACGCCGCTTTACCCAGCCTACCCGTTATCTTCCACT
GGACCAGCATCCTCCACTTCACC/- GACAGCTACCTCTCCGAATCCAGGTGGGATCCCGGTCTCGTCCCCGGGGATCAAAACCTCCAGTGGACTTTCAGCTCTCGCATCAGCCCAGCAGTGCGCGATCGCCACACCTCACGGAATAAACGACATCCTCAGCCGACCCTCGGTGGCTTGTTCTCCCGCAGGAATCTTGTCTGGACTGCCCCGTTTCAGCAGCCTGAGTCCCCCACCGCCTCCAGGGCTTTATTTCAGCCCTAGTGCCGCGGCTGTAGCGGTGGCTCGCTATCCCAAACCCCTGACAGAGCTTCCCGGCAGAACCCCGATATTCTGGCCTGGAGTTATGCAAAGCCCACACTGGAGAGATGCCAGATTTGCGTGCTCACCACGTAAGTGCACTTTTTGTTGTAGCGTCTGAATGATAACTTATTAACAATAATAACAAACATAATCACCATTAAAGGATGCGAAAATATCATTAGCTAATTTGGATTGTCTTCCTTTACAGATCAAAACTCAGTTCT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
nkx6.1um321/um321Homozygous♀+/- ♂+/-Fig. 7 with image from Yildiz et al., 2019Fig. 7 with image from Yildiz et al., 2019
nkx6.1um321/um321 + MO1-prdm12bComplexFig. 7 with image from Yildiz et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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