Genomic Feature
cy50
- ID
- ZDB-ALT-190514-1
- Name
- cy50
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Epidermal Stem Cell Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 18: 10690177 - 10690180 (GRCz11) (1) Details
- Nucleotide change
- TCCA/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 4 bp deleted in Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
ATCTCTTTATTGCATTTTATTATAGGATTCAAATAATGTTTACTGATTTCTTCTCACAGGTATTGCTGAACTATTGCAAAGAGTATACAGGAAGTATGCGTTTTCCAGCTCTCCGCTCAACCTGTATTTTGAGCATGCTCAGTTTGATTCATTGCATTCCCGTTCATCAGCATGACCGGAAAAATGTCAAACTGCAGGCAAAGACCATCATCGTCAGAATCAGGGAACACATTGACGGGGTAATGAGTTAAAACTCATAAATTTAACATGAACTAATGCATGCAAAATTCATCGAGACTTATTTTTTCTTTCCATCTCATCTTCTCTCACAGCAAAATTTACTTCCAACGCTCATCATTGGGGATCCAGGACATTATCCAGAGATTCCCGCTGACAAACCCATCCAAGGGCTCGGCTCCATCATGGAAACCATTAATACCTTCCACAAGGTTCTTCAGAAGCTTCCAAATAAGCATGTTGACCAGATACGCCGAGATCTA
TCCA/- CACTTCTGGGTTACCTGGAAGGCATGGACTGCACACTGAAGGAATCAACAAATGGGAAAGCGCTGGACGCTTTTCTAGAGGACAGTGCTTCATATCCCTTTACTTTAGAGTACATGACTTTAAACAGACTGAAACAGTTTATGCAAAAGCTGATCGATAATCTGGACCAGCTGAAAATCTGCTGATTAGCAGTTATAGTATACTATTAAAAAAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATAGACCAAAGCATTGCTATTATGTAAAAAGAATGGATGCATTACCTGATGGAAGGCTAAAAACATAGCTTGGGATGCCAAGCAATCTTGTCCTTGCTATGTAAACAAGCACTGGCAATCCGATACTTGCACACATACTTGCTGCTTGCAGGATGACATCAGCACTTGCTGAGCATGTATAA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| lepacy50/cy50 | Homozygous | ♀+/- ♂+/- | 6 figures from Audira et al., 2018 | ||
| lepacy50/cy50 | Homozygous | Unknown | Figure 5  from Ngoc Hieu et al., 2020 |
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Supplemental Information
- Genotyping protocol
- None
- Ngoc Hieu, B.T., Ngoc Anh, N.T., Audira, G., Juniardi, S., Liman, R.A.D., Villaflores, O.B., Lai, Y.H., Chen, J.R., Liang, S.T., Huang, J.C., Hsiao, C.D. (2020) Development of a Modified Three-Day T-maze Protocol for Evaluating Learning and Memory Capacity of Adult Zebrafish. International Journal of Molecular Sciences. 21(4):
- Audira, G., Sarasamma, S., Chen, J.R., Juniardi, S., Sampurna, B.P., Liang, S.T., Lai, Y.H., Lin, G.M., Hsieh, M.C., Hsiao, C.D. (2018) Zebrafish Mutants Carrying Leptin a (lepa) Gene Deficiency Display Obesity, Anxiety, Less Aggression and Fear, and Circadian Rhythm and Color Preference Dysregulation. International Journal of Molecular Sciences. 19(12):
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