Genomic Feature

tpl138

ID
ZDB-ALT-190411-8
Name
tpl138
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Balciunas Lab Temple
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 7
Variants
Variant Type
Small Deletion
Variant Location
Chr 7: 30333264 - 30333729 (GRCz11) (1) Details
Nucleotide change
GGTGGGCTACATCCAGCCACTAATGTCCAGCAGTTTAGGAAGTGAGACTCATTTACATGCAGGTATGCCTCTTCAAAACTCAAGATTTTTCTTTCTTTGGTTCAGACGCAGCTCTAAAAGCTCCCTGAAGGTCTTTGATGTGAAGTGACAGTCTGAAGCAGCACCTGTGCACAAACTGTTGCAGCGGGACAACAGGAGGCCAGCCGTAAAACAGTGTCTGAATACTTACAATCAGCATCTGCAAAAATGATGTTGGGACTCTTTCCCCCGAGCTCCAGCGTGACTCTCTTCAGATTGCTCTTTCCTGCTGCTTCTTGGATCAGCTTGCCTACCTGTGGAGACAGAGACGAGGAGCCTTAATCACAGCAGAGGAGCCTTACTAAATCTCCCTATCTGTGGGACGCTGTCATTAATAAATCGTCCCCTGCTCTTTGACTGGACAACCAGCAGCATTATCAGACCCCTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
in Exon 8 (1)
Transcript Consequence
Exon Loss of Exon 8 (1)
Protein Consequence
None
Sequences
Flanking Sequence
ATTAGAGTTATTCAATCAAAATCATATTCTGAAGTTAGAACAGTGGTACTTTATGTTTAGTGTCTCTTTTATGTCTTTAGACTCTTTAAAAATGAAAATAAACATGACACATTTTGTTATTTTAAGCAAAAAAGAAAACCTCTAAATGACAAATAAACAAGAAAAAATAAAACACAGGTGATAATTAGGAAACATCCTCAAAAATGCCTTCTAAAATAATTGATGAATAGTTTTGGAGCCATTGAATTCTGCTTAGGCATTTGTAATACGTTTTTCTATGGTGCGTCTGCTGTTTATGCACAGATCCATGCTTATGTGTACATCTGGGTGAGATAACAGACACCTGGGAAAAGGCTGGACTGGCAGACTTTGGCATTTGACGGGTTAATGGAGCAGGCAGATTTACGGTTCTAGTGAGATGTGGTTCATTCAGCTGATTTATGGGGGGCTGTGCTTGCGGCTGCTGAAAGCATTTAAAGCACTGACGTGCGCCTTGGTTT
GGTGGGCTACATCCAGCCACTAATGTCCAGCAGTTTAGGAAGTGAGACTCATTTACATGCAGGTATGCCTCTTCAAAACTCAAGATTTTTCTTTCTTTGGTTCAGACGCAGCTCTAAAAGCTCCCTGAAGGTCTTTGATGTGAAGTGACAGTCTGAAGCAGCACCTGTGCACAAACTGTTGCAGCGGGACAACAGGAGGCCAGCCGTAAAACAGTGTCTGAATACTTACAATCAGCATCTGCAAAAATGATGTTGGGACTCTTTCCCCCGAGCTCCAGCGTGACTCTCTTCAGATTGCTCTTTCCTGCTGCTTCTTGGATCAGCTTGCCTACCTGTGGAGACAGAGACGAGGAGCCTTAATCACAGCAGAGGAGCCTTACTAAATCTCCCTATCTGTGGGACGCTGTCATTAATAAATCGTCCCCTGCTCTTTGACTGGACAACCAGCAGCATTATCAGACCCCTG/- AGCTTCAGCCCACATCTTAAATTTCTATTAGTGCTCGCGGAGGATGGAATGTCCCGCACGCAACAGTATCTGCTGGCTAA  ...
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
aldh1a2tpl137/+; aldh1a2tpl138/+ComplexFig. 4 with image from Burg et al., 2018Fig. 4 with image from Burg et al., 2018
1 - 1 of 1
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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