Genomic Feature
ca305
- ID
- ZDB-ALT-190204-2
- Name
- ca305
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- Lab of Origin
- McFarlane Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 11: 35569602 - 35569620 (GRCz11) (1) Details
- Nucleotide change
- TTGAAGGACAAGAAGACCC/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 19 bp deleted in Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CTCACATCTCCTGTTTAGCATCTGCTATTGATTATTTCAGAAATGTGCCTAAAAACATACTACCGAAAATAATTGAGACGGCATGTTCAGCTTTCTGTAAAATTCTCGGACCTGTGTTGAAGTTTCGCAATGTTTGTTTTTTTCAGCCCTTGTTGTGTTTTTAATTACTCTGACACCAAATGAAAGTAGGCGCAGCTGGATGAGAAAAATCTAAGACGTTCGTTGGGAAAGATATTAGTGCCGCCATGATGAGTTTCGCTCATTGGGCGTGTGGTTAGACTAGAGAATTTGTCTACTCTGTGAATTTCCCGCCGAATCAGAAACATTTATCAACTCATCAAATTCAGTCATGAAAACCAGAAGGTAAGCATGTGAGAAAAGCATATTCCAGAACATTCACAGGGTTCTTCCAAACCACAGGCCACACAAACAGAGCCGCAATCCTTAAAAGGAACGCAAGAGCAAACCAAGAGAAACCAGAACTGAATGCTCTCTTACCT
TTGAAGGACAAGAAGACCC/- GCGGGGCATTTTGAGGTTCATTGCCCAAGACCAACGTTAGGACAGACAGAACCAGGAGAACCTGGACTGGCCATAGACTGTCCAAGAGCATGGTGCATGCGTTGAAGACAGGTGCAGAGGTCACTGAGAAAAAAAGAAAAGTACAATATTTTAAAGAACTGTATGATTACAGAATGTTATTTTGTGGGGCAATAATTTGTCTCTATTCACAGGTCTGCAGACGTCACTAGCTCCATTTGAGTGCATTGTGTCTGACATTGCATCGCTGAGTGATGCAGTCTCAGCTTGCATCATAAAGGCTGCATCCAGATACTATTGGGTCTGCATTGGTTTTGAGCTAACCACTAAACAAATGACAGTTCTTTATAATATTAACCAAAGTTAAGTTTTTATTAAGATTACAAAAATACCAGGGAACATGATTATATCACTTGTGATGGGTTACAAAAAAAACTATGTAGAACAAAATCACTATTCATAAAAATTCACACAAAAAAAAA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| sema3fbca305/ca305 | Homozygous | ♀+/- ♂+/- | Fig. 2  from Halabi et al., 2022 | ||
| sema3fbca305/ca305 | Homozygous | ♀-/- ♂-/- | 5 figures from Halabi et al., 2022 | 3 figures from Halabi et al., 2022 | |
| sema3fbca305/ca305; ci5Tg | Complex | Fig. 6 from Halabi et al., 2022 |
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Supplemental Information
- Genotyping protocol
- None
- Halabi, R., Cechmanek, P.B., Hehr, C.L., McFarlane, S. (2022) Semaphorin3f as a cardiomyocyte derived regulator of heart chamber development. Cell communication and signaling : CCS. 20:126
- Hehr, C.L., Halabi, R., McFarlane, S. (2022) Spatial regulation of amacrine cell genesis by Semaphorin 3f. Developmental Biology. 491:66-81
- Watterston, C., Halabi, R., McFarlane, S., Childs, S.J. (2021) Endothelial Semaphorin 3fb regulates Vegf pathway-mediated angiogenic sprouting. PLoS Genetics. 17:e1009769
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