Genomic Feature

ci200

ID
ZDB-ALT-181003-1
Name
ci200
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Chunyue Yin Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 11
Variants
Variant Type
Delins
Variant Location
Chr 11: 13231385 - 13231391 (GRCz11) (1) Details
Nucleotide change
CATTCTT/ATACCTCTA
Variant Notes
CRISPR/Cas9 mutagenesis was used to target the eighth exon of the  ...
Homozygotes begin to show increased mortality at 11 dpf. Very low survival to  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
9 bp inserted / 7 bp deleted in Exon 8 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTATTATTATTATTATTATTAACATACTGTTATTCTAGTCACACAAAAAGGTTTCATTATTTAATATTGGTTAATGTATCTACTAACATAAACTAAGAACAATACTTATACAGCATTTATTAATTTTAGTTCAACATTCAATAATGCATTATTAAAATCCAAATTCATGCTTGACAACATTAGATAATGTGAGTTAACACAAACTAACAATAAACAAAAATATTTTCAATAACTAATCTTAACAGTCATGAACATATACTGTATAATTTTATTGTTTATTGTTTGTTCAAGTTAGTAAATGCATTAACCTTATTGTAAAGTGTTACCGCTGTTTTTATGTGGCTGAAATTATTTGTTAAAGCGTCTACTAAAGAATAAGATGTAATATAATATAAATGCAGTTTAAATGACAGTGTGGTCTTCTGCTTCAGGCTTTTGGATATCGAATATGAAATGACCAATTTTGCCTACTATTATGTTGGCATCGGAGCAGGGGTCTT
CATTCTT/ATACCTCTA GGATACCTCCAAGTGAGCTTTTTAAACTAATCAAGTTATTGTTTTTTTGTCAATGAAATGTACCAAATGTACAAAAATATGTTTGTTGTTTCTATCAGATCTCTCTGTGGATCACTGCAGCAGCAAGACAGATTCAGATTATCAGGAAGATGTACTTTAGGAAGGTCATGAGGATGGAGATTGGTTGGTTTGACTGCACTTCAGTAGGAGAACTCAACACTCGAATGTCTGAGTAAGATGTTCGTACTTGCCAGAGCAGAGACGTTGGAAATAAATGAATGACCTATTAATGTGGGTGCTTCCATTTGATCTTAGTGACATCAACAAGATAAACGATGCCATTGCTGATCAGGTGGGAATCTTCATCCAGCGCTTCACCACTTTTGTGTGTGGTTTCCTCATGGGATTCGCGAGAGGTTGGAAACTGACTCTGGTTATCATCTCCGTGTCTCCTCTGATCGGGATTGGAGCAGGACTCATGGCTCTGGTGAGAAAGGAAA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
abcb11bci200/ci200Homozygous♀+/- ♂+/-3 figures from Ellis et al., 20173 figures from Ellis et al., 2017
abcb11bci200/+Heterozygous♀+/- ♂+/-2 figures from Ellis et al., 20172 figures from Ellis et al., 2017
abcb11bci200/ci200; ci202TgComplexFig. 4 from Ellis et al., 2017Fig. 4 from Ellis et al., 2017
abcb11bci200/ci200; um14TgComplex2 figures from Ellis et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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