Genomic Feature

sfc22

ID
ZDB-ALT-180725-1
Name
sfc22
Synonyms
  • N40fs (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Hata Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 12
Variants
Variant Type
Small Deletion
Variant Location
Chr 12: 13349051 - 13349054 (GRCz11) (1) Details
Nucleotide change
CCCC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TCCAAATATAAAAAATAATTAAGATTTTTTTTTTGCTTGTTTTAGGGAAATGATCTGCCAGTGGATATGTGAAATAATCTTGTTTTCACTTTGAAATGTAAATTTTTGGACTAGAAAAAAGACGAAAATTCTAAGTAAGAATTGTTTTTTCCCCAGCATAAATCATATAAATTCCCTATAAATACAGTGATTAAACAATTCGGTAGCTCCTAGTCAACTATAATTCAGACTGGACATTGCGCACATTGCGATATCAATGCTGAAACAATACTTTTTGCAGCCCTAACTAGTATTATTGTGGACCCCAGTTTTAATGTCTTTTAAAGAATATTTCTGTTTATGTCTATATATTTTTTTACATCTATAGCTTTCTTAAAGATGTCTTTCCATGCTGGCCGTGGATGCCCGAGGGGTAGACTACCCGCTCCGGGTCAAATATATCATCCTGCTTCCCCACGATATCACTACGACCCTTCCGCTGCTCCCGGACCTGTCTATAA
CCCC/- CAGGGCGGCAGCAGCTACATGCCACCTCATCCTGACTTCATGTCGTTCCACTTCCCTCCACCATCACAGGCTTCCAACACCCTGCCTCAGTGCCCCATACGTCCACCAGTCTTCACAGAACCACCCCCTTTTCCACCACCTCCTCCTCACAGCTCAGATGGCTCGACTCCAATGCCGATTCAGAACTCTTATCCTTACATGATGCCCAATATCCCCCCTCCACCCCTGCCACCTATGCCACCCTCAGTTCCACCCACTATGCCCTACCCTCCAACATACCCTATGAGCTACCCTCCACAACCCCAGCTTCCCCCTCCACCCAGCTTCAACCCAGCTTATGGTCAGCCTAGTGGTTCCTTCAAGCCTGAACGTTCCCGTCCACCACTTCACTACAAGACGGATTCCTGTTCTCGTTCCCCTGAGAGACTTCGGCACCATGATGATCACCGGCACAGGGGTCACAGTTATAGCGAATATGGAAGCAGACACAACCGAGAGTT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
droshasfc22/+ (AB)HeterozygousUnknown
droshasfc22/sfc22; s843Tg; sd2TgComplexFig. S2 from Jiang et al., 2018Fig. S2 from Jiang et al., 2018
droshasfc22/+; s843Tg; sd2TgComplexFig. S2 from Jiang et al., 2018
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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