Genomic Feature

b1307

ID
ZDB-ALT-180418-1
Name
b1307
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Stankunas Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 10
Variants
Variant Type
Small Deletion
Variant Location
Chr 10: 22754203 - 22754242 (GRCz11) (1) Details
Nucleotide change
AAAGGACTGAGTGTGTTTGTCTTCAGGTGGAAGGCGCAGT/-
Variant Notes
A 40 bp deletion that spans the first 14 bp of exon 15 introduces an early stop  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
40 bp deleted (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
GGACATATTCAGTGTAAGAACTGTCTGATCCAATGAAGTCACAATCAAACAAATGTATACATACCAAAAAATAATCATAATTAAAGTCAGTTACCTGTTTATATTTTAGGAAGAGAAAGACAGTGAAGATGAAGATGAGGAAGACAAATCAAAGGAAAAAAATGAGGCAAAATCCAACTCACAAAACAACATTGGGACAACTTCAACCACAACCAGGTTAAAAAACATCATAGATCATTCAAATTTAAGATTTTTTTTTCAGATTTTCATTTTTATTCTTTAGTAGATTTTTTTTTAAATGTAAGAAATTATATTTGTGAAAATGTACTCTCTTTTTTACAGCTCAAAGCAGAAAGCTGTTGGGAAAATTATTAAATTTGGAACCAACATTGACTTATCTGACCCAAAACGGTGAGAAATGTTTGTTGATAAATAGTACTGGACAGGGAAATTCAGTAAAAAAAAGTATCAATGCTACTGTTAGTTGTCCTGGTGTGAGT
AAAGGACTGAGTGTGTTTGTCTTCAGGTGGAAGGCGCAGT/- TGCAGGAGCTGTTGAAGTTGCCTGCGTTCATGCGTGTGTCCTCCACCGCAAACATGCTGAGTCATGTTGGCCACACTATACTGGGCATGAACACTGTTCAGCTTTATATGAAGGTCCCTGGCAGCCGCACACCAGGTCAGTCCACACACACAAAATATTTTAATGTATTTAAAACTTCTCTAACTCCCACTAACTTATTTAGATTTCAAATAAGACGGGATTACATTATTTACCTTATGGAGATTTTTTTTTTTTATTAAAAACTGCTTTTATTCTAGCCAAAAATGAAACAAATAAACTTTCTCCAGAAAAAAATATTATCAGACATACTGTGAAAATTTCCTTGCTGTTAAACATCATTTGATAAATACTTAAAAAAGAAAAAAATTCAAAGGGGTTTAATAATTCTAACTTCAACTGTATTCTTTTGTTCAAATTGAACTGTACCTGATCAAAATAGGACTGGTTTTATTTGGATATATTCATTATTTGTTAATTGT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
kdm6bbb1307/b1307Homozygous♀-/-Fig. 2 with image from Akerberg et al., 2017
kdm6bbb1307/b1307Homozygous♀+/- ♂+/-Fig. 2 with image from Akerberg et al., 2017
kdm6bbb1307/+HeterozygousUnknownFig. 2 with image from Akerberg et al., 2017
kdm6bab1308/b1308; kdm6bbb1307/b1307Complex3 figures with image from Akerberg et al., 2017
kdm6bab1308/b1308; kdm6bbb1307/b1307; hsc4TgComplexFig. 4 with image from Akerberg et al., 2017
kdm6bab1308/b1308; kdm6bbb1307/b1307; s843TgComplex2 figures with image from Akerberg et al., 2017Fig. 5 with image from Akerberg et al., 2017
kdm6bab1308/b1308; kdm6bbb1307/+Complex
kdm6bab1308/+; kdm6bbb1307/b1307ComplexFig. 3 with image from Akerberg et al., 2017
kdm6bab1308/+; kdm6bbb1307/b1307; s843TgComplexFig. 5 with image from Akerberg et al., 2017Fig. 5 with image from Akerberg et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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