Genomic Feature

ca21

ID
ZDB-ALT-171006-4
Name
ca21
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Childs Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 25
Variants
Variant Type
Delins
Variant Location
Chr 25: 32748951 - 32748970 (GRCz11) (1) Details
Nucleotide change
GCCGGTCATTTCCACGAGCT/TCCGGTCCTTGGCAG
Variant Notes
Mutant has a 5 bp deletion and point mutations around the deletion site. This  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
15 bp inserted / 20 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation: at position 279 (1)
Sequences
Flanking Sequence
TGTTAATCTGACTTAAAACAGCTTGCGTAATTTAAAAATCTAAGTTGGAACATGATTAACTTAGTTTAACAAGTTACAATGACCTAAAAACATATGCTGTCAGACCAATTAATCATACAATTTTACAGTGTAGATAGGTAGACAGACAGGCTACACATGGGCTATCGTTATAAATAATAATTTACAGGACAATAATTAGCTGTATACAAGAAAATAACAAGGTAACTTAGCTATTTCATTTTGAACAACCAAAAAAAAAAACAAATATAAAAAAAATAGCTATGAAAGTGCACCAAACAGCCACAGAATAAACCTCCCCAAATATTATAGGTTTTAAGCCTAAAATAAGCACATTTTAGAAGCAAAATCCAATTTCAAATAAGCTTTCCTACCGTTTTGTCGTTGTGTTGCTGTTGCTGTAGTTGTTTCATGAGTATGGACTTCTTCTTGTCTTTGCAGCGTTTGTTTTGGAACCACACTCGTATGACCCGTGGGCTCAG
GCCGGTCATTTCCACGAGCT/TCCGGTCCTTGGCAG GCTCTTTCATTAGCGCGTCCGGTCGAGGGTTTGCATTATAACACGTCCGGAGGGTGTGAAGCTGCTTTTCGTTTAATACTGTCCGAACACGCGTGGTTTTCTCCGACTGCTTGTGAACGTGATTCCGATGAGGTGGCTGTCGAACTGGCACAGGTTCTGCGAATAAAATGCGTATAAATCACTTTTCGGCTTAAGAGGTCATTTCATTATTTAGACACACTGCAGAAGAGCACGCTTACTTGAAGGTTAAATTGTGCATACACACATCGGTCTGTAGCCAAGTGCGTGTCAGTCAAAACACCTCTTAGGGCCTTCAATATGCTCTCAACTTTGCTGTATGTGCAAAATGTTGAAGGATCGACATGGGATATGAAAGTATAACATGCAATAATAGCACCAACTTACAGAGCAATGAGAGGGTTAAGCAGTGGCACATAATCGATGTGAAAATGTGTATGGTTCACTGCTGTTTAAGCGTTAGCAATGCACCACATATAATT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
isl2aca21/ca21Homozygous♀+/- ♂+/-2 figures with image from Lamont et al., 2016Fig. 3 with image from Lamont et al., 2016
isl2aca21/ca21; ci5Tg; y7TgComplexFig. 1 with image from Lamont et al., 2016
isl2aca21/ca21; y7TgComplex2 figures with image from Lamont et al., 2016
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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