Genomic Feature
b1161
- ID
- ZDB-ALT-161010-10
- Name
- b1161
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- adult males treated with ENU
- Lab of Origin
- Kimmel Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 16: 28493230 - 28493315 (GRCz11) (1) Details
- Nucleotide change
- CAGTCGCTACCGTGAAGAGCACCTTCTCTATGCACTTCAGGTCATTACTGACGGACCGGTTCACTGCAGCACCAACAGCTCCCTCA/AGAGTTT
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 7 bp inserted / 86 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AAATTAACCCTGACCCAGTCATCTAAACTTAATCTTAACCATGTAATTTCCTCAAATTATTGTACTAAAGTACATTGTAAGTTTGCAGTGCTTTTAAATTTAATTTGTTGAGTTGTATATTGTGCTTATTTACAAAACAGAGTATACCTTTTTTATTTTCACCCATTTATAGGGTTTTATCTGTAATCTTAAATTAGTTTTCATCAGTTTTCATAACAGTGCATTTCTGTTAAGCCCTAATGATTATAATCATTATAATTATTATAATGTTAATTCCTTAAAATATTAATATATGAAAATATTCAGTTTCCTCTGAAAATATTCAATATACATCAGTTTATTAGTAAAATTTCAAATTTTTTTACAGAAGTAATAAAAATAGATGCTAATTTATGCTGGTTTTATCACTATAATTTATTTATGTGTCTCTCTTCTTGTTCCCAGTTACATAACAAAGGTCCGAGTTCAATAAGCAGGACAGTGCTGGAGGTGGGCTGGCC
CAGTCGCTACCGTGAAGAGCACCTTCTCTATGCACTTCAGGTCATTACTGACGGACCGGTTCACTGCAGCACCAACAGCTCCCTCA/AGAGTTT ACCCACTGGAGTTGGAGGTAAACTCTCTGTCCTGTGCTGCACGTTTACAGAAATGAGCCTGCATCCAGAATTAATACTGCATCAATGAAAGTGACCACCGGACTACACCTTTTCTCATCCCATTTACACTTCTCACTTGTGTTCTTCACTGTCACAAAGCTCTAAACATTATAGCAACATGCTAATTCATGCTAAAAACATGTTCATACTAGCAACATGTTAATAATTGTTAGGGAAAGGAGCAAGGGCTCGAATGCAGGAAAAAATATGGTTTTATTAACTATGAAATAAAACAAAAATGCAAAAAAAAAACACCCAGAGACGGGAAAACAATAACAAAAGGCAAAAACTTGACTGGGCTTACTAGGCAGGGCACCACAGTCACTGGCGCCGGAACATAGGGAAAGCATTGACAACGAACTGGCACCGGACACCAGACAAGAGGGAGCTATAAGCAGAAAGAATTAACAAACAGGTGAATTGAAAGAACTAATTGGATA - Additional Sequence
- GenBank:JN399198 (1)
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| itga8b1161/b1161 (AB) | Homozygous | ♀+/- ♂+/- | 2 figures  from Talbot et al., 2016 | Fig. 5 from Talbot et al., 2016 | |
| itga8oz6/+; itga8b1161/+ | Complex | Table 1 from Talbot et al., 2016 | |||
| fras1b1048/b1048; itga8b1161/b1161 (AB) | Complex | ||||
| itga8b1161/b1161; sox9azc81Tg (AB) | Complex | 3 figures from Talbot et al., 2016 | 3 figures from Talbot et al., 2016 | ||
| fras1b1048/b1048; itga8b1161/b1161; sox9azc81Tg (AB) | Complex | 2 figures from Talbot et al., 2016 | 2 figures from Talbot et al., 2016 |
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Supplemental Information
- Genotyping protocol
- None
- Talbot, J.C., Nichols, J.T., Yan, Y.L., Leonard, I.F., BreMiller, R.A., Amacher, S.L., Postlethwait, J.H., Kimmel, C.B. (2016) Pharyngeal morphogenesis requires fras1-itga8- dependent epithelial-mesenchymal interaction. Developmental Biology. 416(1):136-48
- Beattie, C.E., Raible, D.W., Henion, P.D., and Eisen, J.S. (1999) Early pressure screens. In The Zebrafish: Genetics and Genomics, H.W. Detrich, III, M. Westerfield, and L.I. Zon, eds., San Diego, CA: Academic Press, Methods Cell Biol.. 60:71-86
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