Genomic Feature

bns18

ID
ZDB-ALT-160602-13
Name
bns18
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Stainier Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 16
Variants
Variant Type
Small Deletion
Variant Location
Chr 16: 9979980 - 9979984 (GRCz11) (1) Details
Nucleotide change
ATGAC/-
Variant Notes
truncation in the bHLH domain of Id4
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
Polypeptide Truncation: Val>Stop at position 73 (1)
Sequences
Flanking Sequence
AGAGCCACATTGACCATCAATAAGGCATTTTACACTGAGCCATTTACAATAATGATGATCATCTAAGATAATAAATACAATAAATATTTATGTAGCCTATATAGGTAGAGTATAATATAATAATATTATAAAGGATATACAAATATAGGTCAATACATTTGCATATGTGGGTTACACAAAAGATGCGATAAATGAACAAAACTTAACACGCACACACAAATTGGTTTAACATTTTGGCGAAAATCAAAGCCAGAACAAAGTCTGATCTACAGCATCCTATTTTGTCTGATGCAGATCAATGAAATACGCTATGTCGCTTCGCTGCGCACCCAGTGTTAAGTGCAATGCATTTAGTGACAGCGAATTAAATGTTTCGGGTCCTGCTTACCTGCTCTGTGTTGATTTGTGTGAGTGGAGTCCGTGTGGAAGCGGGTGGGCTCGTCTGTTTCAGGAGCGCAGGGTGCGTTTCCAACGCCAGCTGCAGGTCCAGAATATAGTCA
ATGAC/- ATGCTGGAGGATTTCCACTTTACTGACTTTCTTATCCTGCGGAATAGTGGGCACCAAGCGTTTGAGTCGGCTGTAGCAGTCGTTCATGTCGTACTGCAGACAGAAAAGATCCTCATCTTCCATTTTGCATCGGCTGCTCTCCGACAAATAACGCAAGGAGAGCTGACTGCAGCTAGAAGGAAGCTTATGAGGGCGAACCGGCACGCTGGCCTTCATTGTAATAAATAAAACTACAAAAAGAAAAACGTGAAAAAGGAAAAAAAAAAACACGGACGCAACAATACGTTTAGTAAAAAAAAAACGTAGTATGGTGCACGAAGAAAAAGAGCGCAGATCTATCCTGACCACATCTCCTCTCTGAGTGTGAACGCACAGTGCAAAACAGCGGATGAGTTATTGTTGGTCACACAGAGGAAAAGGGGAGGCGCCATCCGCTCGAGCTTTGACAGTCCTACGCGAGGAAACCGGTCAGTCACGAGCTCTCGTGATGATGGAGCAGC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
id4bns18/bns18Homozygous♀+/- ♂+/-Fig. 7 with image from Ahuja et al., 20162 figures with image from Ahuja et al., 2016
id4bns18/bns18; fr13TgComplexFig. 6 with image from Ahuja et al., 2016
id4bns18/bns18; ia5TgComplexFig. 8 with image from Ahuja et al., 2016
id4bns18/bns18; ia5TgComplex
id4bns18/bns18; s896TgComplexFig. 5 with image from Ahuja et al., 2016
id4bns18/+; ia5TgComplexFig. 8 with image from Ahuja et al., 2016
id4bns18/+; ia5TgComplex
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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