Genomic Feature

sq31

ID
ZDB-ALT-160414-12
Name
sq31
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
zinc finger nuclease 
Lab of Origin
David P. Lane Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 11
Variants
Variant Type
Delins
Variant Location
Chr 11: 22911901 - 22911905 (GRCz11) (1) Details
Nucleotide change
CATGA/GTACTGTACTAT
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
12 bp inserted / 5 bp deleted in Exon 3 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
None
Sequences
Flanking Sequence
AAAAGCACAAACAAAACAGACATTTGTCAATGAGAGCACCTACATTATGACAAAACCCATTTTACAGTCTTTAAGTCTTAGTGCCCTCTTGTGTCAATTTGAAGGCATAAAAATACTACAATTGATAATCCACACTTAGTTTTTCCATTTTAAATATCTAATGACTTAAATACAGTGAACTGTAGTATGCTATTACCACAAAACTAGGAACATACAAGCAAAATGTGTATACATTTAAACTGATGCCATACAAGAATGACAAGAGGTTATTTGTATGAGACCACATTGATAACTCTTAAATAGTAACATTAATTTTGTCCATCAGCCTAATGACTAAATTGATTTCTTTCCATTTTCTCTCCACTTAAATCTGCTTACTGGTAGCAATGAGCTTACCTGGGGTTTTTAACAGAAAAGCTCCCCACTTCCAGCAGCTCTCCCAGTGGGTCATCGTGACAGTGGACGATGTGCTGCCTCTGTTTGTCATACAGCTGCTTCAT
CATGA/GTACTGTACTAT TGTACTGACCCAGATAATGCATGACCTGTTCAAAAACACTGGGTTCATTAGGTGGACCTTTATCAAGCGGTTCAGCACTTATCTAGAGCTTGTGTCAATCTGCCAAGGTCAGTTTGTGTACACTTCTCACCTCCTTCAGGGTAAACACCTCCTCCTGAGCACCTGCTACTTTCAAGATCTGCAGCAGAGGCGCTCTGGGGTGGACCTGTAAAGTCATACATATTCAATATGTGGTTTACTAATGTCGGGTTCACACCAAAAGAAATATTTAAAGAAGTATTTTGAAAGTAAAATTGAAAGTGTTTGCACAACTAAGTTACCTACAAAGTCAATGCTAATGCACAAATAGATTAATTTCTGCTAAGCGATGCAAATGATGCAGAATGCGTGATATGTTTGCAGAGAGCTCAATTATGCTGGAATTCACCTCAATCTTGTCTTTCATGCAAGTTAAAAAGATTCAACTTGAGCAAAAAATTCATGCATATGATATGATGCTG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
mdm4sq31/sq31Homozygous♀+/- ♂+/-text only from Chua et al., 2015
tp53zdf1/zdf1; mdm4sq31/sq31ComplexFig. 6 with image from Chua et al., 2015
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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