Genomic Feature

el576

ID
ZDB-ALT-160325-4
Name
el576
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Crump Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 7
Variants
Variant Type
Small Deletion
Variant Location
Chr 7: 35708618 (GRCz11) (1) Details
Nucleotide change
C/-
Variant Notes
WT irx5a .... ACCCGTATGGAGACCCAGC

el576 irx5a . ACCCGTATGGA -  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
1 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
GCAAAACACCATACGTCACCAGCAATTCTCAGTCCATAAGAAGTCAAATTAGAGGAGTTCAAGGTGATTATTATTTAAAGCAATTCTCCCATTATAAATAATATACCACCATTAACCAGCAATCAATTTTGCGCCCGGAGTGGAAACGACTGCGATGAAAAATTGATGATTTTTCCACAGACCTGCCTCTGTGTCTGTGGAGTCTCCCTTGTCCGTGGGCTTGTTTGGCTCGTCGTCGTCGTTTTTCTCTAGATCAATGTTTTCGTCCTCCTCCTCGTCTTCACTCCGGTTCCGTGGGGTCCAGGTCATCTTGTTCTCCTTTTTTAGCCTCCTCCTGGCGTTGGCGAACCAGGTGGACACTTGAGTGAGGGTCATTTTAGTGATGATGGCCAGCATGATCTTCTCGCCTTTGGTGGGGTACGGGTTTTTCCGGTGCTCGTTAAGCCAAGCTTTCAAAGTAGCTGTGGCGTCCCGGGTAGCATTCTTGCGGTAAGCTGGGT
C/- TCCATACGGGTACGAGCCCAGGGGAGCAGCATAAGGATGATACCCTATAGACCCGGCCATGCCTGTCGTGTGGTCATAAGGTGAGCTCTGCAAAGAGCCAAACCAATTGTTTCATTAGCAAAATATCACTTTGGACACCTGCGCACAATGCAGGATTGCTTTCAAATCGCTTACACAAACACTCAAAAGCCAGCATAAACAAACACACACACTTACGCACACACACATGCATGCCACATGTACACACTTTACGTCTAATTAATCGAAATTGTAAGTACAAGGCCGCGGGGTCACGTATTTTATCGTTTAATTTTGGCTAGATGCCTCATTTCACCCAAAAAGAATGACTGTAAAATACATTTTTACAACTTTCTTTCCAAATCCCCCTTCTTTGTTAATGATCATAAATCTCATTTCGACAGCTTTACTGACTTTTGACTATGTTTATTTTCAGATTAGCCAGCTAATTAGAAGTTACAGCTTTATGTAGGGTCATCTGA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
irx5ael576/el576Homozygous♀+/- ♂+/-
irx3ael835/el835; irx5ael576/el576; irx6ael836/el836Complex2 figures with image from Farmer et al., 2021
irx3ael835/el835; irx3bel837/el837; irx5ael576/el576; irx5bel722/el722; irx6ael836/el836Complex3 figures with image from Farmer et al., 2021Fig. 4 with image from Farmer et al., 2021
irx3ael835/el835; irx3bel837/el837; irx5ael576/el576; irx5bel722/el722; irx6ael836/el836; irx7el540/el540ComplexFig. 7 with image from Farmer et al., 2021
irx1bel833/el833; irx3ael835/el835; irx3bel837/el837; irx5ael576/el576; irx5bel722/el722; irx6ael836/el836; irx1ael830/+; irx2ael831/+; irx4ael832/+; irx4bel834/el834ComplexFig. 3 with image from Farmer et al., 2021
irx1bel833/el833; irx3ael835/el835; irx3bel837/el837; irx5ael576/el576; irx5bel722/el722; irx6ael836/el836; irx7el540/el540; irx1ael830/+; irx2ael831/+; irx4ael832/+; irx4bel834/el834ComplexFig. 3 with image from Farmer et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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