Genomic Feature

el540

ID
ZDB-ALT-160325-2
Name
el540
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Crump Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 23
Variants
Variant Type
Small Deletion
Variant Location
Chr 23: 37815730 - 37815746 (GRCz11) (1) Details
Nucleotide change
GCCTGCTGGATATCAAT/-
Variant Notes
WT irx7 .....TGCCTGCTGGATATCAATT

el540 irx7 . T - - - - - - - - -  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
17 bp deleted (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
AGCAAATCCAAAATAAGAAACATATTTTAACCAGATAATATAGCAACAAAATATTGTTTGCTTACGTTTTGGACTTATAATAATTATCTAGTTTTAAACAGACGAATTGTATACATGTATCCACTATGTAATGGATTTAAAAGTTAATGAAGTCCAATCAAACGCTGAATCCATCATCTCTAGAAAATGAGAATTTCAAACGATGCCCTACTTTGTTCACTCCTCAGTACGGATAAGCATGAGATAATCATCGTGAGTTTAAAGACTTTTAGATGCCGTTAAAAGGAACAACCGAAGTTCTTTGAAGGGATTTAGTCCCAGTGAAAGCCTTTGGACCGCAGCTGTCAATCAACCGCCCTGGCTCCGCCTACATTCGCTGCTCCTCCTATAAAGTGCGCCCGTGAACTCGAGTGTCATTTAAACACCAGAGCTCAGGGAGTAAGGATGCCTGCTTCATCAACGGGGTTTGCAAACTTCTTCATGGACAGAAACATCAACAT
GCCTGCTGGATATCAAT/- TATTAGGCTGCCCACCTGGAATGCAACAGCCACCGCCACATCTTGTGGGAATGGCCGGGATGCCCTTACCTTTCTCAGGAATACCGGGCTACAGTTTCATCCCTTATCCTCATCCGGGACACATGGCACACATTGTAAGTAGTATTTTGACTGATTTCTAATATATGTGCATTAAAAAATAAATGTTTATTAATTTTAATTAGGATTAATGCAGGATGAAACACTTTTCGCAATGATATTTATATTCTAAAATACTTCATGCTTACTTTCAGAGCAATTCCTATGACCTCAAGGCTGCATCGCCGTATCACCAAGCTCTCCTCGGACGGGGAGGACCATACTACACCCCGTATCGTCCCATCCCAGCTGACGACCCCAGTCGGGTCACTAAAGTTGCCACCCGGGAAAGCACCAGCGCTTTGAAGGCCTGGCTCAGCGAGCACCTGAAAAACCCATATCCCACCAAAGGCGAGAAGATCATGCTTGCCATCGTCACCAAA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
irx7el540/el540Homozygous♀+/- ♂+/-2 figures with image from Farmer et al., 2021
irx1bel833/el833; irx7el540/el540; irx4bel834/el834ComplexFig. 4 with image from Farmer et al., 2021Fig. 4 with image from Farmer et al., 2021
irx1bel833/el833; irx7el540/el540; irx4bel834/el834; el10TgComplexFig. 3 with image from Farmer et al., 2021
irx1bel833/el833; irx7el540/el540; irx1ael830/+; irx2ael831/+; irx4ael832/+; irx4bel834/el834ComplexFig. 3 with image from Farmer et al., 2021
irx3ael835/el835; irx3bel837/el837; irx5ael576/el576; irx5bel722/el722; irx6ael836/el836; irx7el540/el540ComplexFig. 7 with image from Farmer et al., 2021
irx1bel833/el833; irx3ael835/el835; irx3bel837/el837; irx5ael576/el576; irx5bel722/el722; irx6ael836/el836; irx7el540/el540; irx1ael830/+; irx2ael831/+; irx4ael832/+; irx4bel834/el834ComplexFig. 3 with image from Farmer et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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