Genomic Feature

y447

ID
ZDB-ALT-160323-5
Name
y447
Synonyms
  • lnx2aD329 (1)
  • lnx2aΔ329 (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Dawid Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 24: 21671085 - 21671346 (GRCz11) (1) Details
Nucleotide change
TACCTGTGTTTGAGATGTGCCTCCAGGTCGCAGCGAGGCATGCTGAGCGAGCAGGAGGGCGTGAGCGGACAGGTGACCGACAACTTGTCCAGCAGCTTGTGCACCAGAATGCTGGAGCGCCGGCAGACCTGCAGCTGCAGATGCGCACGGTCCAGTGGACAGAAGTCCCGTTCCTGCAGGAAGCTGCGCAGACAGCGGGCACAGAAGGTGTGGCCACATGGTGTATCCAGGGGCTGAACTAACGGCTGAAGGCAGATGTGGC/-
Variant Notes
The exon 2 splice donor site has been lost resulting in a truncated protein.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
in Donor Splice Site of Exon 2 (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
GCTATTTATATTCTCCTGGATTTATTATAAATATGGAGGTGTTTGTATCTGAATTTTATTAAGCACACTTTATACACATAGCTAGGCCTGTATATAAGGTTTATTGGTGCTGTTAAATTAATTATCACGTTCAAAAAAAAAAGTTTGTACACATGGATGTATTGATTAAATGTTGATAACATGCCTCCTTTTCTTCTGCTTTTCAGACATTTTCATAAACTTTCCCCCCTTTTTGACTTTTTGAGCAAAAAATTTTGGCAGTCTATAAAAAGCTGTTCGCCATTTCTTATTTTGGCCAATCTAAACAATTATAAACAACATAAAATATACACATTTTGATGTTCTGATTGCAGTTCCTATGTAAAAGAACCACTTCCTGCCCTCTATCTGAATTTCATGCAACATCAATGGCATCAGATAAAAATAACCTAATGCTCGAGTACCAAAACATTGACATCAAATAGTGCTTATTTGAGTCTGAATATTTGTCTTGAGAACTT
TACCTGTGTTTGAGATGTGCCTCCAGGTCGCAGCGAGGCATGCTGAGCGAGCAGGAGGGCGTGAGCGGACAGGTGACCGACAACTTGTCCAGCAGCTTGTGCACCAGAATGCTGGAGCGCCGGCAGACCTGCAGCTGCAGATGCGCACGGTCCAGTGGACAGAAGTCCCGTTCCTGCAGGAAGCTGCGCAGACAGCGGGCACAGAAGGTGTGGCCACATGGTGTATCCAGGGGCTGAACTAACGGCTGAAGGCAGATGTGGC/- ACACCAAATCATCATCCACTTCCAAACGATAGTTATAAAGGTGGTTCTCCCAGGTGCGGTGAATCTGTCCACATTCAGAGCAAAGGGCCTCCAGAAGAGCTTCGCTCACCATGCCCGGGTCCACTCCCTCTCCCAGACTGCCCATTGCTCTCGGCTTTGGCTACACTCACTCAGTCCATCCCGCGGGCGTCAGAGGCTGTGCGACTCCGGCAGGGGACGACCACCCCCTGGCAGGCACAGTGACATCACTCTGAAGGGTGGCAGAGAAACAGTGAGGTAACTATTGTGAATGAGAGACAGTGTTTGTGTGTGCCAGGATGAGATTATGTTGCAGAGCAGTGTGGGTTTACTCCTGCACATTAATCTGGCAGTGTAATCTCATGCTCTCTCGCCTAGAGAAATCTTTCAATCCCGCAGAGAGAGAATTATCCAGGATTGAGGCAGGGAGCACCGAGTCAAGAGGTTTTCATGTGAAAGTGAGAAAAGGAGGGGCAAGAGAA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations