Genomic Feature

chi1

ID
ZDB-ALT-160314-1
Name
chi1
Synonyms
  • cd1 (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Itoh Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 8
Variants
Variant Type
Small Deletion
Variant Location
Chr 8: 53873723 - 53873730 (GRCz11) (1) Details
Nucleotide change
TAGCTTCA/-
Variant Notes
This allele is the result of an 8 bp deletion in exon 6 of the mib2 gene,  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
8 bp deleted in Exon 6 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Ala>Stop at position 538 (1)
Sequences
Flanking Sequence
AGATCAGCAGTTTCTGAAATACTCAGAGCAGCCTGTCTGGCAGCAACAACCATGCCACGATCAGAGTCTCTTAAATCCCCTTTCTTCCCCATTCTGATGCTCAGTTTGAACTGCAGCAGATCCTCTTTACCATGTCTACATGCCGAAATGCAGTGAGCTGCTGCCATGTGATTGGCTGAGTAGACATTTGCGTTAACGAGCAGTTGGACAGGTGTACCTAATAAAGTGGCCGGTGAGTGTAAGCCATTATCATTCTGACACTGTTATTTTCATTGTCTGACAGTCGTGTAAACACTATCGTGGAGTTTTTCTCCTATTGTTTGAGTGCAAACAGTATATTTGTTGTACTCTCCCATTCACTGCACTCTAAGCTTACGAACTATAACGATTTCTGCAGCGAAGAAACACGCAAATCCGAAAAGTGTGTTATGCATCTCCATACTGTGTTAATACTCACCCGAAGGCCGTGTAGTGCAGCGCCGCGTCTCCGTCCTCATCTT
TAGCTTCA/- ATGCTACTGTTAGCCTGTAGCAGGACCTTCACCACCTCTACATGACCCTGATGAGCTGCGACCTGCAGAGCCGTCTTTCCCTGGTTCTTAATGTCCACCTAAACACACACACACACACACACACACACACACACACACACACACACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCATTCATTCATTTATTCATTCATTCATTCATTTATTCATTCGTTCATTCATTTATTCATTCGTTCATTCATTTATTCATTCATTTAATCATTCATTTATTCATTCATTCAATCATTCATTCATTCATTCATTCATTTATTTATTCATTCATTCATTTATTCATTCATTCATTCATTCATTTATTCATTCATTCATTCATTTATTCATTCATTTATTCATTCATTCATTTATTCATTCATTTATTCAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
mib2chi1/chi1Homozygous♀+/- ♂+/-Fig. 2 with image from Mikami et al., 2015
mib2chi1/+HeterozygousUnknownFig. 2 with image from Mikami et al., 2015
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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