Genomic Feature

p184

ID
ZDB-ALT-151216-87
Name
p184
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Michael Granato Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 7
Variants
Variant Type
Small Deletion
Variant Location
Chr 7: 71920976 - 71920983 (GRCz11) (1) Details
Nucleotide change
CACAGGAA/-
Variant Notes
premature stop codon following the LDLa repeats, lack of β-propeller domains,  ...
an 8bp deletion resulting in p.F319Wfs*13
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
8 bp deleted in Exon 9 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ATAGGAAGAGGGTCATGTGACACATCAAACTTATTGGGAATTTCACAAGAAAAACAATGGTGTGCTTGGTTTTACTCTAACTTTATTCTTTTATGAGTTATTTACAAGTTTCTGACCAATTATAAAATGTGTTTAATGTGCTGCCCATTGTGTTGGATTGTCAATGCAGCACTCTTCACACACTGATAGCAACAGCGCAGGAGAAATGCCAGCACAGGCTTCCTGTATCCGTAGTTTCAGGTGCTGCACATCTCGTAGCTTCACTAGAACTCCGTTTACTAGAACTTCTATGTTAAGCTGCGTTGATTTAATCTACATTGTTAAAGCGCTATAGAAATAAAAATGAATTGAACTGAATCAATTACTACTTGCTCATATTTCAGATGCAAAAGTGTGTTGCAGACTCACGGCAGTCCTGGTGTGGATGTTCATCTGTTCCATCTTCACAGTCTTTGACGTCATTACAGACCTTTCGCTGTCCAATACAGCGGCCATTCCCA
CACAGGAA/- CTGATCGGGCGCACATGGAGGAGTTTCTGATGAAACATTCAAATAAATAATTTATAATAAATGAATTAAAACAGACTGTTTTAGAATGCAAAATGATGCTGAAACGTTAATGAAAGCGTCAGGTTCTAATTTTTCATAACCAGAGGTGGGTAGTAACGAATTACATTTACTTCATGACATTTACTTGAGTAAAATTGTAAAAATTGTTAGAGAAAAACTCCTCTGGTACTGCCCACAGTATATATATATATATATATATATATTTATACAACAGTTCTGTCTGGTTCTCAAATCTGATTGGCTGATAGCCGTGCGATATTCTGCAATATCAGAACTCCTACTGCCTCTTTACCCTTTGTGTATTACTCCGCCCACATACAGCCAGCAACAAGCAGACACTACAGATGTAACCAGCAAGTGCTAATGGCGGAGGAGGAAACCCGCACGGTTTTAAAAATACTCCTTTACTGTGTCACAAAATAAAGTTCTAAGAGTTTTTC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
lrp4p184/p184Homozygous♀+/- ♂+/-Fig. 6 with image from Remédio et al., 2016
lrp4p184/p184; ml2TgComplex3 figures with image from Gribble et al., 2018
lrp4p184/p184; ml2Tg; p169TgComplex2 figures with image from Gribble et al., 2018Fig. 3 with image from Gribble et al., 2018
lrp4p184/p184; ml2Tg; vu234TgComplex
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 4 of 4
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