Genomic Feature
rj31
- ID
- ZDB-ALT-150527-1
- Name
- rj31
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Ting Xi Liu Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 7: 38087024 - 38087025 (GRCz11) (1) Details
- Nucleotide change
- TG/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 2 bp deleted (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
GACTGACAGGGTAAAATCATGCCCATTAGCTGCACTGATATGCTTAGCGTAGCTAACACACATTCCTAACAGGACTACACCAGCATGTATTAGTCCTAATGTGTAGATGAGCTTATCGTTTCTTTCTTTGTTTTTGTACAAAAGGCACATGTATACCGCAGCTGCCTGGCTCCTATAGAAACACTTTCAGAACGTGTCAGCGGTTATCCAGCAGACGAAAAAAATCACGCAAAAGTTACTTCAAAAGTCAAGCTCGCTCCGTTAAGCGCAGTTGCCCATGGCTTTGACAAACGAGCCGTCGGGGAGCTGCCTGAAGATGCCCCGTAACGTCTCCAGTTCTCGCGTGAGGTGTTCCACCCTCTTGCGCAGTCTATCGTTATCCGCCGATAACTCGATCACTTTTTGTTGCGTCTCCACATTGCGCATTTTCGCCTTGTCCCGACTCTTGCGCACGGCTATGTTGTTGCGCTCCCTCCTCAGCCTGTACTCGGTGCTGTTCT
TG/- TCGACGTGTTTCTTGGATTTCCCTCGATCGCCAATCTTCATGGAGCCCCCCGGCAGGTGGCTGTGCTGGTGGTGCGGACTAGGTACGGGCGTCGGGGGAGGTGTGGGATGGCCCGGCTGGAGATGCATGGTGGTTTGCGCGCAGTGCGCGATCTGGTGCTGAAGGTAGGACAGATGCGGCGCGTGGTGTTGAGAGTGGTGGTAGGTGGGTGGCATCGAGTCGCCAAGCTCATCTTCCTCCCGAGGCTCTTGTTTGATGGCCACGGGTCTCATTCTTGCTTGGCTGTCGTAGATGGGTTCTAGTTTGGAAGAATCCATGTAGCCGTTCAGGCAGCCATACATCTGCGGGGCCCCCGGCGCGCCATTGGCACCGTGGTGGTAGTCGTAGTCTCCGCTCGCCAGTTTGAGCTTCTCTTGCTTGGAGCTGTTGTGGAATAAGTCAGCCAGGAACTCGTCGTTGAAGGCAGACGGATCAATGTAGGCGCTGATGTCGATGGAGTT - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
cebparj31/rj31 | Homozygous | ♀+/- ♂+/- | 2 figures ![]() | 3 figures ![]() | |
cebparj31/+ | Heterozygous | Unknown | 3 figures ![]() | 5 figures ![]() | |
dnmt1rj794/rj794; cebparj31/rj31 | Complex | Fig. 6 ![]() | |||
cebparj31/+ + MO7-tp53 | Complex | Fig. 5 ![]() | |||
tp53zdf1/zdf1; cebparj31/rj31 | Complex | Fig. 5 ![]() | Fig. 5 ![]() | ||
cebparj31/rj31 + MO1-sumo1 + MO1-sumo2b + MO1-sumo3a | Complex | Fig. 4 ![]() | Fig. 4 ![]() | ||
cebparj31/+ + MO1-sumo1 + MO1-sumo2b + MO1-sumo3a | Complex | Fig. 4 ![]() | Fig. 4 ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Yang, R.M., Song, S.Y., Wu, F.Y., Yang, R.F., Shen, Y.T., Tu, P.H., Wang, Z., Zhang, J.X., Cheng, F., Gao, G.Q., Liang, J., Guo, M.M., Yang, L., Zhou, Y., Zhao, S.X., Zhan, M., Song, H.D. (2023) Myeloid cells interact with a subset of thyrocytes to promote their migration and follicle formation through NF-κB. Nature communications. 14:80828082
- Yan, L., Gao, S., Zhu, J., Zhou, J. (2022) Irf2bp2a regulates liver development via stabilizing P53 protein in zebrafish. Biochimica et biophysica acta. General subjects. 1866(10):130186
- Wang, L., Liu, X., Wang, H., Yuan, H., Chen, S., Chen, Z., de The, H., Zhou, J., Zhu, J. (2018) RNF4 regulates zebrafish granulopoiesis through the DNMT1-C/EBPα axis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 32(9):4930-4940
- Liu, X., Jia, X., Yuan, H., Ma, K., Chen, Y., Jin, Y., Deng, M., Pan, W., Chen, S., Chen, Z., de The, H., Zon, L.I., Zhou, Y., Zhou, J., Zhu, J. (2015) DNA methyltransferase 1 functions through C/ebpa to maintain hematopoietic stem and progenitor cells in zebrafish. Journal of Hematology & Oncology. 8:15
- Yuan, H., Wen, B., Liu, X., Gao, C., Yang, R., Wang, L., Chen, S., Chen, Z., de The, H., Zhou, J., Zhu, J. (2015) CCAAT/enhancer-binding protein α is required for hepatic outgrowth via the p53 pathway in zebrafish. Scientific Reports. 5:15838
- Yuan, H., Zhang, T., Liu, X., Deng, M., Zhang, W., Wen, Z., Chen, S., Chen, Z., de The, H., Zhou, J., Zhu, J. (2015) Sumoylation of CCAAT/enhancer-binding protein α is implicated in hematopoietic stem/progenitor cell development through regulating runx1 in zebrafish. Scientific Reports. 5:9011
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