Genomic Feature
p162
- ID
- ZDB-ALT-140721-2
- Name
- p162
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- adult males treated with ENU
- Lab of Origin
- Michael Granato Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 2: 688442 (GRCz11) (1) Details
- Nucleotide change
- C/T
- Variant Notes
-
causes premature stop
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- G>A (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation: Trp>Stop at position 118 (1)
- Flanking Sequence
-
GAGGTCATGATGTTGTCCACGCTGAAGCCCTGCGCGGGGGCCTGGTGGTGCTGCTCTCCAGCGCTGTCCAGGCTGAGGGAGCGGGTGGAAGGGATGCTGTGCGGGCTGCCGCTCGACATGCTGCTGCTGCTGTCGGGGCTCTCGATCTTCGGGACGGTGCTTAGCGTGGGCGAAACAGCCTGCGGAGGAGTGGACGTGCCGTTCTCGGTTTTAATGTCCTGAATGCGCACGGGCTGAGAGCCAGGCACCGACTGCTCCTGCTCGCGGGCCTGCGGCTGCGCCTGGCGGGACGGCGCCTCTTTAACACCTCGGTCCTCCTTGTCCTTCATGGCGTCCTTCTTTTTAAATCGCCGTCGTCGCCTCAAAAAGCTGCCGTTCTCAAACATATTATACGAGTCCGGGTCGAGGGTCCAGTAGCTGCCTTTTCCGGGTTTCTTATCATCGCGTGGAACTTTGACAAAGCACTCGTTCAGGGATAAATTATGCCGGATGCTGTTCTG
C/T CAGCCCTGCTTGTTGTCTCTGTAAAAGGGAAAGCGCTCCATGATGAACTGATAAATACCATTAAGGGTCACCTTTTTGTCCGGGGAGTTCTGGATTGCCATTGTGATGAGCGCAATGTAGCTGTACGGGGGTTTCACCATATCCTTAGGCTGCGGCTGTGGAGTGTATGGCCCATATGCCCTCGCCATGCTGGCGGGGTACTGGTCGTGGGCCGCGTGAGAGTACATGGTCATGGGGGCTGGCATGCCGGTGTACCCCCCTCCGGCGGCGGCTCGGTAATAACTTTGGTCGCTGCTGATGTACGGCACAACTCCCAGCGAGTTGGGACTGGAGACGGAATAGCGCGCCTGCATGACTGCTCTCCAAAACGGCGTACAGCTGGCGAAGAACAGTCGTCAAGAAGACTGAAGCAATCCACACACAGACACACACACACACACACAATCCTGCTTGAAATGCGCCTCCTCTGAATCTGGGAATGGGAATCCACCACAGAGTCC - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
foxc1ap162/p162 | Homozygous | ♀+/- ♂+/- | 2 figures ![]() | Fig. 4 ![]() | |
foxc1ap162/p162; la3Tg/+; nz101Tg/+ | Complex | Fig. 7 from Shin et al., 2019 | |||
foxc1ap162/p162; ml2Tg | Complex | 3 figures ![]() | 3 figures ![]() | ||
foxc1ap162/p162; p163Tg | Complex | Fig. 5 ![]() | Fig. 5 ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Shin, M., Yin, H.M., Shih, Y.H., Nozaki, T., Portman, D., Toles, B., Kolb, A., Luk, K., Isogai, S., Ishida, K., Hanasaka, T., Parsons, M.J., Wolfe, S.A., Burns, C.E., Burns, C.G., Lawson, N.D. (2023) Generation and application of endogenously floxed alleles for cell-specific knockout in zebrafish. Developmental Cell. 58(22):2614-2626.e7
- Shin, M., Nozaki, T., Idrizi, F., Isogai, S., Ogasawara, K., Ishida, K., Yuge, S., Roscoe, B., Wolfe, S.A., Fukuhara, S., Mochizuki, N., Deguchi, T., Lawson, N.D. (2019) Valves Are a Conserved Feature of the Zebrafish Lymphatic System. Developmental Cell. 51(3):374-386.e5
- Banerjee, S., Hayer, K., Hogenesch, J.B., Granato, M. (2015) Zebrafish foxc1a drives appendage-specific neural circuit development. Development (Cambridge, England). 142:753-62
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