Genomic Feature
sa1617
- ID
- ZDB-ALT-120411-222
- Name
- sa1617
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation
- Protocol
- adult males treated with ENU
- Lab of Origin
- Stemple Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 14: 23982660 (GRCz11) (1) Details
- Nucleotide change
- C/T
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- C>T in Exon 9 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GAGTTTCTGATTGCCTGTTTATTTACTGAACTTAATTTGATCTGAAGTTCTGTACCAATAATCATTTCTGTTTCGATGCAGTGTGCAAACATCGGCCCAGCAGATTACAACTACGATGAGACCATCAGCACTCTCCGTTACGCCAACCGTGCCAAAAACATCAAGAATAAGGCCAGAATTAACGAGGACCCCAAGGATGCACTTTTGCGTCAATTTCAGAAAGAAATCGAAGAGCTCAAAAAGAAACTTGAAGAAGGTATGGCACAATGTCATGTCTTTGTCAGAATTGTTCTCAAGGGTGTGAGTCACTGGCTCTGGACTAAACCTGCTGGAGTTTGGGTACAGAGCCAGATTTAGGCATGTTCGGTTTGGAGAAATCCCCAGAGATGCAGTACTGTGCTTGATTTTGCTCAGGTGAGGAGATCTCGGGCTCTGATGGCAGCGGATCAGATGATATGGATGAAGATGATGTTGGAGATGGAGGAGAGAGGCGCAGGAAA
C/T GAAGAGGTATAAATCGTCTGTTTTCATTTCATGACAGGTCAGCATTAGTCAAGTTCTCTGAGAAACATGAGGCAGCATGTGGTTATTATTTTACCACAAGCATTGCTTTTAATGTCATCTTTATTGTCTGCTGATAACATATCAGAGGGTTGTGTAATCTATGAGCTCTTTAAATAATGATTTTTTAAAACACTTTTTTTTTTTTTTTTACAAACCCTCATATAAATAATGTAATAGAATATATAATAGAATAACAAGTTTATTCCAAAAGCTTTTTTTATGTATGCTATAAACCTTTTTGTGCATTGCACACTGCCTGACATCATTCTGGTTAAAATTTCTGGCTATCAGTAAAGGAAGAACCATGTGGCTTTGGTTTGTTGTTGTTTAGACCACCAGATCAAACCGATTCAGTTTCATTGTGCGTCATATGCACATATAGGTAATGCCTGGCAGTGACTACAGTATGTCTCACTGTCTAAAAATACAAATTAACGAGT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| kif3asa1617/sa1617 | Homozygous | ♀+/- ♂+/- | 13 figures from 2 publications | 3 figures from Raghupathy et al., 2016 | |
| kif3asa1617/sa1617 (TL) | Homozygous | ♀+/- ♂+/- | text only from Busch-Nentwich et al., 2012 | ||
| kif3asa1617/sa1617 + MO1-kif3a | Complex | Fig. 1 from Pooranachandran et al., 2016 | |||
| ift70m477; kif3asa1617 | Complex | Fig. 4 from Pooranachandran et al., 2016 | |||
| kif3asa1617/sa1617; traf3ip1tp49d/tp49d | Complex | 2 figures from Pooranachandran et al., 2016 |
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Supplemental Information
- Genotyping protocol
- None
- Pooranachandran, N., Malicki, J.J. (2016) Unexpected Roles for Ciliary Kinesins and Intraflagellar Transport Proteins. Genetics. 203(2):771-85
- Raghupathy, R.K., Zhang, X., Alhasani, R.H., Zhou, X., Mullin, M., Reilly, J., Li, W., Liu, M., Shu, X. (2016) Abnormal photoreceptor outer segment development and early retinal degeneration in kif3a mutant zebrafish. Cell biochemistry and function. 34(6):429-40
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