Genomic Feature

i262

ID
ZDB-ALT-120120-1
Name
i262
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with zinc finger nuclease
Lab of Origin
Ingham Singapore Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 17
Variants
Variant Type
Delins
Variant Location
Chr 17: 11254091 - 11254108 (GRCz11) (1) Details
Nucleotide change
TGGACGTGGGCGGCTGGA/GAACG
Variant Notes
18 to 5 bp replacement resulting in frameshift and a premature termination  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp inserted / 18 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CTGCATTAAATTCCATTGTTCTGCGTCATGTTGTTAAAATATGGAAATTTATTTTATCAATCACTGTATTTTCAATGGACTTTCTGCACTCCCTTGCAGCTCCTGACAGTGCTTTTTTCATCTCGTTTTACACTTGAATAACTAAATTAATGCTTAAGTCTATTTAACGGATTATATTAAATAACACTACAACATCGATGCTGTAAAAGCAACCTTTAAAAATGGAAAACAGTCACATTAACCCTTCACCGAATGTTTATAGGTGGCTGAAAAACACTAGCTGTGCACAAACCCCTTTAGAAACACAATGGATTGAATTTGACAATAAAAGTAGTGCCCCTTTAATATGTTTTTGTGCAAGTACCTGTTTTTTGACAGTGCTTCTAACTGCGTGTGAAGCACCTCTCCATCTTTGGCTCTCAAAATGGCTTCTAGGTTTTCTTCCAGAGTCTTCTTGCTCTGCCTGACCTGCCTCAGGACCAGTCCTGCATCCTCAAACA
TGGACGTGGGCGGCTGGA/GAACG TGCTCTTCAGAACGCTGGCTCTGTTTAAAGCAGCAGCCCTGACGGCAATCACATCAACAGGCTCTGGGGGCTGCGAGAGTGGAGGAGAGATTGAGAGATATTGGATGCATTTAAATGACTGTATATATTTTGAGGGGGGGAAAAAACAAACTGTCTTTGTAAGAGAGTCGCTCCAGAGAATAAATATGATAAATATGTTTAATGGAATGCTGCTATGAGCCATTAGAATGAGCACAGGCATTTGGAAGCATTGTTTCCGAATGTTTTTCTGCTGACATGCCAGGAGTTGAGGAGTTTAATTTCCTCTGCCAATATTTTTTTTCACCATTCTCACTCTAAAAACTTTGTATGATTATTAAACATAACATTTTATAATTTTTATTAGCTGATGGATTATATATAATAATATAAATTACATATCACTATAATTATTTAAATGTAAACACTTTAATATATACATATTAGATTTTTAAAAATTATGATTTAAGGATTTTGAAAGA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
si:ch211-185a18.2i262/i262Homozygous♀+/- ♂+/-4 figures with image from Naharros et al., 2018Fig. 1 with image from Naharros et al., 2018
si:ch211-185a18.2i264/+; si:ch211-185a18.2i265/+; si:ch211-185a18.2i262Complex
si:ch211-185a18.2i264/+; si:ch211-185a18.2i265; si:ch211-185a18.2i262/+Complex5 figures with image from Ben et al., 20112 figures with image from Ben et al., 2011
si:ch211-185a18.2i264/+; si:ch211-185a18.2i265; si:ch211-185a18.2i262/+; i233TgComplexFig. 4 with image from Ben et al., 2011Fig. 4 with image from Ben et al., 2011
si:ch211-185a18.2i264/+; si:ch211-185a18.2i265; si:ch211-185a18.2i262/+; y1TgComplexFig. 5 with image from Ben et al., 2011Fig. 5 with image from Ben et al., 2011
si:ch211-185a18.2i265/+; si:ch211-185a18.2i262/+Complex2 figures with image from Ben et al., 2011
si:ch211-185a18.2i265; si:ch211-185a18.2i262/+ComplexFig. 7 with image from Ben et al., 20112 figures with image from Ben et al., 2011
si:ch211-185a18.2i265; si:ch211-185a18.2i262/+; i233TgComplexFig. 4 with image from Ben et al., 2011
si:ch211-185a18.2i265; si:ch211-185a18.2i262/+; y1TgComplexFig. 5 with image from Ben et al., 2011
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 2 of 2
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