Genomic Feature
y75
- ID
- ZDB-ALT-060926-2
- Name
- y75
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- sperm treated with TMP
- Lab of Origin
- Dawid Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 12: 9693225 - 9693229 (GRCz11) (1) Details
- Nucleotide change
- TTGTC/-
- Variant Notes
-
Has a 5-bp deletion in exon 2.
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 5 bp deleted in Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
TCTATGCGAATCTTGGTTCCATTTGGGTTTCAATAGGTCTTCTGCAGTATTTGTGATGATTGGGATGCAGCTCAACAGATAATTCATTGGAAAAATCTTCTGCCACTTTTCCCAAATGATCAACTAGAAGTCAAGTTATTATTTGTTGCTCTTATAACTGGGATCGTTGGCAAGACTTTTTTCAGGTAAACACTGCACACACTTTTCTCCCAACTTTTTCACCTCCAAGCAAAAAAAAAAAAAAATCTAAAATGAAAATCTTAATGGAGACCATAATGTGATTATAATGGAGCCTTTAAATTCTGCACAAGTCTGCCAAGCTCTAAAACAATAATCTAAAAACTGCTGAATCAGAAAGTGAGACTCACACATATACCACAGGTAAGTGAAAGAATAGTAATTCTGCTGAAGCTTACCTGTGTAAAAGCCATTCAATGCATTTCAGAGCAGGCTTGAGCAGAAAGTAAGGTGACAGTCGAGTGAGGAAGAGAGAAATGCTC
TTGTC/- CAGTTTCTTGTTGACCTCTTTGGACTGAACGCTGCGCTCTAAAGTCAAAGATCCTTGACTGAACAGAGTCTCCTGAAACTCACTGAACGCTGCATCAATACCCATCAGCTCCTCCAGTCCCGTGCAGCCTGTTCAGAATGACCAACAACACCAAAAATTAGGCAAAGTGATTGATTATTGCTGACTGCTGTATAAAAATGAGTAGAGCTAAGTAGATGATTATGTAAGAATTATGTAAGAAATTGCATTTTACATGACAAAATTTGTAGTCAGTAATATATCTTCTATATTACACATTTATGGTAATGTAATCTGACTACTTATGGATTACATTTGTGCTGACCTAATTTGATTTCACATATATTGAACTAGGATAATCTTATAATAAAATATATGTTCAATTAAGTCAACTTCAATACATGTTATAATTTAGTTTCCTTAGTTTAGTTTAAACTTTATTGTCCATTCTGCTTGACACAGGAAGGAACTTTGTCTTTAAC - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| heatr1y75/y75 | Homozygous | ♀+/- ♂+/- | Fig. 2  from Aman et al., 2011 | Fig. 2 from Aman et al., 2011 | |
| heatr1y75/y75 (AB) | Homozygous | Unknown | Fig. for (y75) from Phenotype Annotation (1994-2006) | Fig. 2 from Azuma et al., 2006 | |
| heatr1y75/+ | Heterozygous | ♀+/- ♂+/- | |||
| heatr1y75/+ (AB) | Heterozygous | Unknown | |||
| heatr1y75/y75; tcf7nkhg21cEt/nkhg21cEt | Complex | Fig. 2 from Aman et al., 2011 |
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Supplemental Information
- Genotyping protocol
- None
- Aman, A., Nguyen, M., and Piotrowski, T. (2011) Wnt/β-catenin dependent cell proliferation underlies segmented lateral line morphogenesis. Developmental Biology. 349(2):470-482
- Parant, J.M., George, S.A., Pryor, R., Wittwer, C.T., and Yost, H.J. (2009) A rapid and efficient method of genotyping zebrafish mutants. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(12):3168-3174
- Azuma, M., Toyama, R., Laver, E., and Dawid, I.B. (2006) Perturbation of rRNA synthesis in the bap28 mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system. The Journal of biological chemistry. 281(19):13309-13316
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