- Title
-
Genome wide identification, phylogeny, and synteny analysis of sox gene family in common carp (Cyprinus carpio)
- Authors
- Zafar, I., Iftikhar, R., Ahmad, S.U., Rather, M.A.
- Source
- Full text @ Biotechnol Rep (Amst)
SOX protein annotation in Cyprinus carpio. |
SOX genes Binding Domains: Relationship of SOX genes in common carp based on distance made phylogenetic tree. The each SOX genes have a HMG (High mobility group) domains or SOX7 and SOX18 having C-terminal domains, to display phylogenetic tree with different color coded ranges labeled with induvial gene names. |
SOX genes in common carp and other vertebrates with their motif location and sequences. |
Retrieval of all Sox protein network form five big protein databases. |
a SOX Protein interaction (Protein-protein interaction) with other proteins. b SOX Protein interaction (Protein-protein interaction) with other proteins (K means clustering). |
Gene ontology analysis of all SOX proteins. |
The phylogenetic analysis of all SOX genes of common carp with their corresponding homologs from other higher vertebrates and fish species. |
Phylogenetic association and presence intron and exon on individual gene. |
Common carp physically mapping of chromosomes among Zebrafish (Danio rerio) and Human (Homo sapiens). |
Common carp physically mapping of chromosomes among Zebrafish (Danio rerio) and Human (Homo sapiens). |
Common carp physically mapping of chromosomes among Zebrafish (Danio rerio) and Human (Homo sapiens). |
Common carp physically mapping of chromosomes among Zebrafish (Danio rerio) and Human (Homo sapiens). |