FIGURE SUMMARY
Title

Sox Gene Family Revealed Genetic Variations in Autotetraploid Carassius auratus

Authors
Huang, X., Wu, C., Gong, K., Chen, Q., Gu, Q., Qin, H., Zhao, C., Yu, T., Yang, L., Fu, W., Wang, Y., Qin, Q., Liu, S.
Source
Full text @ Front Genet
FIGURE 1

The morphological appearances of BSB (A), 2nRCC (B), and 4nRCC (C). Bar = 1 cm.
FIGURE 2

The chromosomes at metaphase in BSB, 2nRCC, and 4nRCC. (A) The 48 chromosomes of BSB. (B) The 100 chromosomes of 2nRCC. (C) The 200 chromosomes of 4nRCC. Bar = 20 μm.
FIGURE 3

The SNP loci from BSB found in the 4nRCC sequencing results. The dots represented sequence identity, and the hyphens represented insertions/deletions. The black boxes showed the SNP loci.
FIGURE 4

Alignment of the Sox14 CDs (A) and derived aa sequences (B) of BSB, 2nRCC, and 4nRCC. The dots represented sequence identity.
FIGURE 5

Alignment of the Sox1b CDs (A) and derived aa sequences (B) of BSB, 2nRCC, and 4nRCC. The dots represented sequence identity, and the hyphens represented insertions/deletions. Base insertions/deletions and aa insertions/deletions were framed by red boxes.
FIGURE 6

Phylogenetic analyses of the amino acid sequences of all the Sox genes in zebrafish (Zeb), BSB, 2nRCC, and 4nRCC. The phylogenetic tree constructed using MrBayes with mixed model; MCMC = 10 million generations. Different branch colors denoted different Sox subfamilies.
FIGURE 7

Conserved motifs of seven subfamilies (B1, B2, C, D, E, F, and K) of all Sox genes in zebrafish, BSB, 2nRCC, and 4nRCC. Conserved motifs were checked using the online Multiple Expectation Maximization for Motif Elicitation (MEME, http://alternate.meme-suite.org/) program. Different colors denoted different motifs in Sox genes, and the sequence of motif 1–10 in Sox genes was presented.
Acknowledgments
This image is the copyrighted work of the attributed author or publisher, and ZFIN has permission only to display this image to its users. Additional permissions should be obtained from the applicable author or publisher of the image. Full text @ Front Genet
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