ZFIN ID: ZDB-LAB-990120-1
Baier Lab
PI/Director: Baier, Herwig
Co-PI / Senior
Researcher:		 Wullimann, Mario F.
Contact Person: Cerny, Annegret
Email: hbaier@neuro.mpg.de
URL: http://www.neuro.mpg.de/baier
Address: Max Planck Institute of Neurobiology Department Genes –- Circuits -– Behavior Am Klopferspitz 18 82152 Martinsried near Munich Germany
Country: Germany
Phone: 011-49-8578-3200
Fax: 011-49-8578-3240
Line Designation: mpn


GENOMIC FEATURES ORIGINATING FROM THIS LAB
Show first 50 of 369 genomic features


STATEMENT OF RESEARCH INTERESTS
We are interested in the relationship between genes, neural circuits, and behavior.

Visual system
•Retina and tectum
•Hypothalamus
•Spinal and reticulospinal circuits
•Neuronal cell-type diversity
•Synaptic specificity
•Prey capture
Optomotor and optokinetic behavior
•Psychophysics
•Segregation of visual pathways
•Synaptic homeostasis
•Light adaptation
Neuro-psychiatric disorders
•Screening, mapping, and cloning of mutations
•Bioinformatics; conserved non-coding elements
•GAL4/UAS enhancer/gene trapping
•Optical imaging; optophysiology with genetically encoded indicators
•Optogenetic and pharmacogenetic manipulations of neuronal function
•Channelrhodopsin; halorhodopsin; archaeorhodopsin; LiGluR; GluCl


LAB MEMBERS
Fernandes, Miguel Post-Doc Foerster, Dominique Post-Doc Grätsch, Swantje Post-Doc
Kölsch, Yvonne Post-Doc Larsch, Johannes Post-Doc Marquart, Gregory Post-Doc
Shainer, Inbal Post-Doc Stemmer, Manuel Post-Doc Wu, Yunmin Post-Doc
Bauer, Lisa Graduate Student Kappel, Johannes Graduate Student Mearns, Duncan Graduate Student
Parker, Ashley Graduate Student Schneider, Martin Graduate Student Sherman, Shachar Graduate Student
Al Kassar, Mariam Research Staff Donovan, Joseph Research Staff Finger-Baier, Karin Research Staff
Kühn, Enrico Research Staff Laurell, Eva Research Staff Mokayes, Nouwar Research Staff
Robbins, Trace Research Staff Slanchev, Krasimir Research Staff Arnold-Ammer, Irene Technical Staff
Cerny, Annegret Administrative Staff


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS
Gerlach, G., Wullimann, M.F. (2021) Neural pathways of olfactory kin imprinting and kin recognition in zebrafish. Cell and tissue research. 383(1):273-287
Fernandes, A.M., Mearns, D.S., Donovan, J.C., Larsch, J., Helmbrecht, T.O., Kölsch, Y., Laurell, E., Kawakami, K., Dal Maschio, M., Baier, H. (2020) Neural circuitry for stimulus selection in the zebrafish visual system. Neuron. 109(5):805-822.e6
Kölsch, Y., Hahn, J., Sappington, A., Stemmer, M., Fernandes, A.M., Helmbrecht, T.O., Lele, S., Butrus, S., Laurell, E., Arnold-Ammer, I., Shekhar, K., Sanes, J.R., Baier, H. (2020) Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. Neuron. 109(4):645-662.e9
Barker, A.J., Helmbrecht, T.O., Grob, A.A., Baier, H. (2020) Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of comparative neurology. 529(9):2159-2175
Förster, D., Helmbrecht, T.O., Mearns, D.S., Jordan, L., Mokayes, N., Baier, H. (2020) Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey. eLIFE. 9:
Wu, Y., Dal Maschio, M., Kubo, F., Baier, H. (2020) An Optical Illusion Pinpoints an Essential Circuit Node for Global Motion Processing. Neuron. 108(4):722-734.e5
Pantoja, C., Larsch, J., Laurell, E., Marquart, G., Kunst, M., Baier, H. (2020) Rapid Effects of Selection on Brain-wide Activity and Behavior. Current biology : CB. 30(18):3647-3656.e3
Robles, E., Fields, N.P., Baier, H. (2020) The zebrafish visual system transmits dimming information via multiple segregated pathways. The Journal of comparative neurology. 529(3):539-552
Antinucci, P., Dumitrescu, A., Deleuze, C., Morley, H.J., Leung, K., Hagley, T., Kubo, F., Baier, H., Bianco, I.H., Wyart, C. (2020) A calibrated optogenetic toolbox of stable zebrafish opsin lines. eLIFE. 9:
Zuccarini, G., D'Atri, I., Cottone, E., Mackie, K., Shainer, I., Gothilf, Y., Provero, P., Bovolin, P., Merlo, G.R. (2019) Interference with the Cannabinoid Receptor CB1R Results in Miswiring of GnRH3 and AgRP1 Axons in Zebrafish Embryos. International Journal of Molecular Sciences. 21(1):
Mearns, D.S., Donovan, J.C., Fernandes, A.M., Semmelhack, J.L., Baier, H. (2019) Deconstructing Hunting Behavior Reveals a Tightly Coupled Stimulus-Response Loop. Current biology : CB. 30(1):54-69.e9
van Staden, C., de Brouwer, G., Botha, T.L., Finger-Baier, K., Brand, S.J., Wolmarans, D. (2019) Dopaminergic and serotonergic modulation of social reward appraisal in zebrafish (Danio rerio) under circumstances of motivational conflict: towards a screening test for anti-compulsive drug action. Behavioural brain research. 379:112393
Wullimann, M.F., Umeasalugo, K.E. (2019) Sonic hedgehog (shh) expression in zebrafish forebrain identifies the teleostean pallidal signaling center and shows preglomerular complex and posterior tubercular dopamine cells to arise from shh cells. The Journal of comparative neurology. 528(8):1321-1348
DeMarco, E., Xu, N., Baier, H., Robles, E. (2019) Neuron types in the zebrafish optic tectum labeled by an id2b transgene. The Journal of comparative neurology. 528(7):1173-1188
Marquart, G.D., Tabor, K.M., Bergeron, S.A., Briggman, K.L., Burgess, H.A. (2019) Prepontine non-giant neurons drive flexible escape behavior in zebrafish. PLoS Biology. 17:e3000480
Yashina, K., Tejero-Cantero, Á., Herz, A., Baier, H. (2019) Zebrafish Exploit Visual Cues and Geometric Relationships to Form a Spatial Memory. iScience. 19:119-134
Shainer, I., Michel, M., Marquart, G.D., Bhandiwad, A.A., Zmora, N., Ben-Moshe Livne, Z., Zohar, Y., Hazak, A., Mazon, Y., Förster, D., Hollander-Cohen, L., Cone, R.D., Burgess, H.A., Gothilf, Y. (2019) Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System. Current biology : CB. 29(12):2009-2019.e7
Kunst, M., Laurell, E., Mokayes, N., Kramer, A., Kubo, F., Fernandes, A.M., Förster, D., Dal Maschio, M., Baier, H. (2019) A Cellular-Resolution Atlas of the Larval Zebrafish Brain. Neuron. 103(1):21-38.e5
Kramer, A., Wu, Y., Baier, H., Kubo, F. (2019) Neuronal Architecture of a Visual Center that Processes Optic Flow. Neuron. 103(1):118-132.e7
Larsch, J., Pantoja, C. (2019) Learning: Complexities of Habituation in Escaping Zebrafish Larvae. Current biology : CB. 29:R292-R294
Baeuml, S.W., Biechl, D., Wullimann, M.F. (2019) Adult islet1 Expression Outlines Ventralized Derivatives Along Zebrafish Neuraxis. Frontiers in Neuroanatomy. 13:19
Tabor, K.M., Marquart, G.D., Hurt, C., Smith, T.S., Geoca, A.K., Bhandiwad, A.A., Subedi, A., Sinclair, J.L., Rose, H.M., Polys, N.F., Burgess, H.A. (2019) Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping. eLIFE. 8
Bernal Sierra, Y.A., Rost, B.R., Pofahl, M., Fernandes, A.M., Kopton, R.A., Moser, S., Holtkamp, D., Masala, N., Beed, P., Tukker, J.J., Oldani, S., Bönigk, W., Kohl, P., Baier, H., Schneider-Warme, F., Hegemann, P., Beck, H., Seifert, R., Schmitz, D. (2018) Potassium channel-based optogenetic silencing. Nature communications. 9:4611
Helmbrecht, T.O., Dal Maschio, M., Donovan, J.C., Koutsouli, S., Baier, H. (2018) Topography of a Visuomotor Transformation. Neuron. 100(6):1429-1445.e4
Larsch, J., Baier, H. (2018) Biological Motion as an Innate Perceptual Mechanism Driving Social Affiliation. Current biology : CB. 28(22):3523-3532.e4
Yakulov, T.A., Todkar, A.P., Slanchev, K., Wiegel, J., Bona, A., Groß, M., Scholz, A., Hess, I., Wurditsch, A., Grahammer, F., Huber, T.B., Lecaudey, V., Bork, T., Hochrein, J., Boerries, M., Leenders, J., de Tullio, P., Jouret, F., Kramer-Zucker, A., Walz, G. (2018) CXCL12 and MYC control energy metabolism to support adaptive responses after kidney injury. Nature communications. 9:3660
Förster, D., Kramer, A., Baier, H., Kubo, F. (2018) Optogenetic precision toolkit to reveal form, function and connectivity of single neurons. Methods (San Diego, Calif.). 150:42-48
Tabor, K.M., Marquart, G.D., Smith, T.S., Geoca, A.K., Bhandiwad, A.A., Subedi, A., Sinclair, J.L., Burgess, H.A. (2018) Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping. ZFIN Direct Data Submission.
Gupta, T., Marquart, G.D., Horstick, E.J., Tabor, K.M., Pajevic, S., Burgess, H.A. (2018) Morphometric analysis and neuroanatomical mapping of the zebrafish brain. Methods (San Diego, Calif.). 150:49-62
Heffer, A., Marquart, G.D., Aquilina-Beck, A., Saleem, N., Burgess, H.A., Dawid, I.B. (2017) Generation and characterization of Kctd15 mutations in zebrafish. PLoS One. 12:e0189162
Freifeld, L., Odstrcil, I., Förster, D., Ramirez, A., Gagnon, J.A., Randlett, O., Costa, E.K., Asano, S., Celiker, O.T., Gao, R., Martin-Alarcon, D.A., Reginato, P., Dick, C., Chen, L., Schoppik, D., Engert, F., Baier, H., Boyden, E.S. (2017) Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proceedings of the National Academy of Sciences of the United States of America. 114(50):E10799-E10808
Köhler, A., Collymore, C., Finger-Baier, K., Geisler, R., Kaufmann, L., Pounder, K.C., Schulte-Merker, S., Valentim, A., Varga, Z.M., Weiss, J., Strähle, U. (2017) Report of Workshop on Euthanasia for Zebrafish-A Matter of Welfare and Science. Zebrafish. 14(6):547-551
Marquart, G.D., Tabor, K.M., Horstick, E.J., Brown, M., Geoca, A.K., Polys, N.F., Nogare, D.D., Burgess, H.A. (2017) High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. GigaScience. 6:1-15
Förster, D., Dal Maschio, M., Laurell, E., Baier, H. (2017) An optogenetic toolbox for unbiased discovery of functionally connected cells in neural circuits. Nature communications. 8:116
Förster, D., Arnold-Ammer, I., Laurell, E., Barker, A.J., Fernandes, A.M., Finger-Baier, K., Filosa, A., Helmbrecht, T.O., Kölsch, Y., Kühn, E., Robles, E., Slanchev, K., Thiele, T.R., Baier, H., Kubo, F. (2017) Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools. Scientific Reports. 7:5230
Amorim, J., Fernandes, M., Vasconcelos, V., Oliva Teles, L. (2017) Evaluation of the sensitivity spectrum of a video tracking system with zebrafish (Danio rerio) exposed to five different toxicants. Environmental science and pollution research international. 24(19):16086-16096
Kuechlin, S., Schoels, M., Slanchev, K., Lassmann, S., Walz, G., Yakulov, T.A. (2017) EpCAM controls morphogenetic programs during zebrafish pronephros development. Biochemical and Biophysical Research Communications. 487(2):209-215
Dal Maschio, M., Donovan, J.C., Helmbrecht, T.O., Baier, H. (2017) Linking Neurons to Network Function and Behavior by Two-Photon Holographic Optogenetics and Volumetric Imaging. Neuron. 94:774-789.e5
Biechl, D., Tietje, K., Ryu, S., Grothe, B., Gerlach, G., Wullimann, M.F. (2017) Identification of accessory olfactory system and medial amygdala in the zebrafish. Scientific Reports. 7:44295
Amorim, J., Fernandes, M., Vasconcelos, V., Oliva Teles, L. (2017) Stress test of a biological early warning system with zebrafish (Danio rerio). Ecotoxicology (London, England). 26(1):13-21
Fernandes, M., Amorim, J., Vasconcelos, V., Teles, L.O. (2016) Resilience assessment of a biological early warning system based on the locomotor behavior of zebrafish (Danio rerio). Environmental science and pollution research international. 23(18):18858-68
Richardson, R., Metzger, M., Knyphausen, P., Ramezani, T., Slanchev, K., Kraus, C., Schmelzer, E., Hammerschmidt, M. (2016) Re-epithelialization of cutaneous wounds in adult zebrafish uses a combination of mechanisms at play during wound closure in embryonic and adult mammals. Development (Cambridge, England). 143(12):2077-88
Filosa, A., Barker, A.J., Dal Maschio, M., Baier, H. (2016) Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum. Neuron. 90(3):596-608
Biechl, D., Dorigo, A., Köster, R.W., Grothe, B., Wullimann, M.F. (2016) Eppur Si Muove: Evidence for an External Granular Layer and Possibly Transit Amplification in the Teleostean Cerebellum. Frontiers in Neuroanatomy. 10:49
Biechl, D., Tietje, K., Gerlach, G., Wullimann, M.F. (2016) Crypt cells are involved in kin recognition in larval zebrafish. Scientific Reports. 6:24590
Wan, Y., Almeida, A.D., Rulands, S., Chalour, N., Muresan, L., Wu, Y., Simons, B.D., He, J., Harris, W. (2016) The ciliary marginal zone of the zebrafish retina: clonal and time-lapse analysis of a continuously growing tissue. Development (Cambridge, England). 143(7):1099-107
Hoffman, E.J., Turner, K.J., Fernandez, J.M., Cifuentes, D., Ghosh, M., Ijaz, S., Jain, R.A., Kubo, F., Bill, B.R., Baier, H., Granato, M., Barresi, M.J., Wilson, S.W., Rihel, J., State, M.W., Giraldez, A.J. (2016) Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2. Neuron. 89(4):725-33
Barber, D.M., Schönberger, M., Burgstaller, J., Levitz, J., Weaver, C.D., Isacoff, E.Y., Baier, H., Trauner, D. (2016) Optical control of neuronal activity using a light-operated GIRK channel opener (LOGO). Chemical science. 7:2347-2352
Donovan, J. (2016) Exploring behavioral circuits with holographic optogenetics and network imaging.. Ph.D. Thesis.
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.M., Higashijima, S., Burgess, H.A. (2015) A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in neural circuits. 9:78
Barker, A.J., Baier, H. (2015) Sensorimotor Decision Making in the Zebrafish Tectum. Current biology : CB. 25:2804-14
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.H., Higashijima, S., and Burgess, H.A. (2015) Enhancer Trap Transgenics. ZFIN Direct Data Submission.
Temizer, I., Donovan, J.C., Baier, H., Semmelhack, J.L. (2015) A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish. Current biology : CB. 25(14):1823-34
Auer, T.O., Xiao, T., Bercier, V., Gebhardt, C., Duroure, K., Concordet, J.P., Wyart, C., Suster, M., Kawakami, K., Wittbrodt, J., Baier, H., Del Bene, F. (2015) Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3. eLIFE. 4
Epting, D., Slanchev, K., Boehlke, C., Hoff, S., Loges, N.T., Yasunaga, T., Indorf, L., Nestel, S., Lienkamp, S.S., Omran, H., Kuehn, E.W., Ronneberger, O., Walz, G., Kramer-Zucker, A. (2015) The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin. Development (Cambridge, England). 142:174-84
Semmelhack, J.L., Donovan, J.C., Thiele, T.R., Kuehn, E., Laurell, E., Baier, H. (2014) A dedicated visual pathway for prey detection in larval zebrafish. eLIFE. 4:299-307
Robles, E., Laurell, E., Baier, H. (2014) The Retinal Projectome Reveals Brain-Area-Specific Visual Representations Generated by Ganglion Cell Diversity. Current biology : CB. 24(18):2085-96
Schoetz, U., Deliolanis, N.C., Ng, D., Pauli, J., Resch-Genger, U., Kühn, E., Heuer, S., Beisker, W., Köster, R.W., Zitzelsberger, H., Caldwell, R.B. (2014) Usefulness of a Darwinian System in a Biotechnological Application: Evolution of Optical Window Fluorescent Protein Variants under Selective Pressure. PLoS One. 9:e107069
Thiele, T.R., Donovan, J.C., Baier, H. (2014) Descending Control of Swim Posture by a Midbrain Nucleus in Zebrafish. Neuron. 83(3):679-691
Jia, S., Muto, A., Orisme, W., Henson, H.E., Parupalli, C., Ju, B., Baier, H., and Taylor, M.R. (2014) Zebrafish Cacna1fa is required for cone photoreceptor function and synaptic ribbon formation. Human molecular genetics. 23(11):2981-94
Skugor, A., Slanchev, K., Torgersen, J.S., Tveiten, H., and Andersen, O. (2014) Conserved Mechanisms for Germ Cell-Specific Localization of nanos3 Transcripts in Teleost Species with Aquaculture Significance. Marine biotechnology (New York, N.Y.). 16(3):256-64
Herget, U., Wolf, A., Wullimann, M.F., and Ryu, S. (2014) Molecular neuroanatomy and chemoarchitecture of the neurosecretory preoptic-hypothalamic area in zebrafish larvae. The Journal of comparative neurology. 522(7):1542-64
Kubo, F., Hablitzel, B., Dal Maschio, M., Driever, W., Baier, H., Arrenberg, A.B. (2014) Functional architecture of an optic flow-responsive area that drives horizontal eye movements in zebrafish. Neuron. 81:1344-59
Gonçalves, P.J., Arrenberg, A.B., Hablitzel, B., Baier, H., Machens, C.K. (2014) Optogenetic perturbations reveal the dynamics of an oculomotor integrator. Frontiers in neural circuits. 8:10
Wullimann M.F. (2013) Ancestry of basal ganglia circuits: new evidence in teleosts. The Journal of comparative neurology. 522(9):2013-2018
Muto, A., Taylor, M.R., Suzawa, M., Korenbrot, J.I., and Baier, H. (2013) Glucocorticoid receptor activity regulates light adaptation in the zebrafish retina. Frontiers in neural circuits. 7:145
Kim, Y.H., Epting, D., Slanchev, K., Engel, C., Walz, G., and Kramer-Zucker, A. (2013) A Complex of BBS1 and NPHP7 Is Required for Cilia Motility in Zebrafish. PLoS One. 8(9):e72549
Gebhardt, C., Baier, H., and Bene, F.D. (2013) Direction selectivity in the visual system of the zebrafish larva. Frontiers in neural circuits. 7:111
Richardson, R., Slanchev, K., Kraus, C., Knyphausen, P., Eming, S., and Hammerschmidt, M. (2013) Adult zebrafish as a model system for cutaneous wound healing research. The Journal of investigative dermatology. 133(6):1655-65
Ziv, L., Muto, A., Schoonheim, P.J., Meijsing, S.H., Strasser, D., Ingraham, H.A., Schaaf, M.J., Yamamoto, K.R., and Baier, H. (2013) An affective disorder in zebrafish with mutation of the glucocorticoid receptor. Molecular psychiatry. 18(6):681-91
Barker, A.J., and Baier, H. (2013) SINs and SOMs: neural microcircuits for size tuning in the zebrafish and mouse visual pathway. Frontiers in neural circuits. 7:89
Grisham, R.C., Kindt, K., Finger-Baier, K., Schmid, B., and Nicolson, T. (2013) Mutations in ap1b1 Cause Mistargeting of the Na(+)/K(+)-ATPase Pump in Sensory Hair Cells. PLoS One. 8(4):e60866
Robles, E., Filosa, A., and Baier, H. (2013) Precise lamination of retinal axons generates multiple parallel input pathways in the tectum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(11):5027-5039
Kress, S., and Wullimann, M.F. (2012) Correlated basal expression of immediate early gene egr1 and tyrosine hydroxylase in zebrafish brain and downregulation in olfactory bulb after transitory olfactory deprivation. Journal of chemical neuroanatomy. 46(1-2):51-66
Griffiths, B.B., Schoonheim, P.J., Ziv, L., Voelker, L., Baier, H., and Gahtan, E. (2012) A zebrafish model of glucocorticoid resistance shows serotonergic modulation of the stress response. Frontiers in behavioral neuroscience. 6:68
Akerboom, J., Chen, T.W., Wardill, T.J., Tian, L., Marvin, J.S., Mutlu, S., Calderón, N.C., Esposti, F., Borghuis, B.G., Sun, X.R., Gordus, A., Orger, M.B., Portugues, R., Engert, F., Macklin, J.J., Filosa, A., Aggarwal, A., Kerr, R.A., Takagi, R., Kracun, S., Shigetomi, E., Khakh, B.S., Baier, H., Lagnado, L., Wang, S.S., Bargmann, C.I., Kimmel, B.E., Jayaraman, V., Svoboda, K., Kim, D.S., Schreiter, E.R., and Looger, L.L. (2012) Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(40):13819-13840
Robles, E., and Baier, H. (2012) Assembly of synaptic laminae by axon guidance molecules. Current opinion in neurobiology. 22(5):799-804
Warp, E., Agarwal, G., Wyart, C., Friedmann, D., Oldfield, C.S., Conner, A., Del Bene, F., Arrenberg, A.B., Baier, H., and Isacoff, E.Y. (2012) Emergence of Patterned Activity in the Developing Zebrafish Spinal Cord. Current biology : CB. 22(2):93-102
Miri, A., Daie, K., Arrenberg, A.B., Baier, H., Aksay, E., and Tank, D.W. (2011) Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nature Neuroscience. 14(9):1150-9
Slanchev, K., Pütz, M., Schmitt, A., Kramer-Zucker, A., and Walz, G. (2011) Nephrocystin-4 is required for pronephric duct-dependent cloaca formation in zebrafish. Human molecular genetics. 20(16):3119-28
Xiao, T., Staub, W., Robles, E., Gosse, N.J., Cole, G.J., and Baier, H. (2011) Assembly of Lamina-Specific Neuronal Connections by Slit Bound to Type IV Collagen. Cell. 146(1):164-176
Nevin, L.M., Xiao, T., Staub, W., and Baier, H. (2011) Topoisomerase II{beta} is required for lamina-specific targeting of retinal ganglion cell axons and dendrites. Development (Cambridge, England). 138(12):2457-2465
Wullimann, M.F., Mueller, T., Distel, M., Babaryka, A., Grothe, B., and Köster, R.W. (2011) The long adventurous journey of rhombic lip cells in jawed vertebrates: a comparative developmental analysis. Frontiers in Neuroanatomy. 5:27
Robles, E., Smith, S.J., and Baier, H. (2011) Characterization of genetically targeted neuron types in the zebrafish optic tectum. Frontiers in neural circuits. 5:1
Yamamoto, K., Ruuskanen, J.O., Wullimann, M.F., and Vernier, P. (2011) Differential expression of dopaminergic cell markers in the adult zebrafish forebrain. The Journal of comparative neurology. 519(3):576-598
Arrenberg, A.B., Stainier, D.Y., Baier, H., and Huisken, J. (2010) Optogenetic control of cardiac function. Science (New York, N.Y.). 330(6006):971-974
Del Bene, F., Wyart, C., Robles, E., Tran, A., Looger, L., Scott, E.K., Isacoff, E.Y., and Baier, H. (2010) Filtering of visual information in the tectum by an identified neural circuit. Science (New York, N.Y.). 330(6004):669-673
Nevin, L.M., Robles, E., Baier, H., and Scott, E.K. (2010) Focusing on optic tectum circuitry through the lens of genetics. BMC Biology. 8:126
Volkmann, K., Chen, Y.Y., Harris, M.P., Wullimann, M.F., and Köster, R.W. (2010) The zebrafish cerebellar upper rhombic lip generates tegmental hindbrain nuclei by long-distance migration in an evolutionary conserved manner. The Journal of comparative neurology. 518(14):2794-2817
Neumann-Haefelin, E., Kramer-Zucker, A., Slanchev, K., Hartleben, B., Noutsou, F., Martin, K., Wanner, N., Ritter, A., Gödel, M., Pagel, P., Fu, X., Müller, A., Baumeister, R., Walz, G., and Huber, T.B. (2010) A Model organism approach: Defining the role of Neph proteins as regulators of neuron and kidney morphogenesis. Human molecular genetics. 19(12):2347-2359
Schoonheim, P.J., Arrenberg, A.B., Del Bene, F., and Baier, H. (2010) Optogenetic localization and genetic perturbation of saccade-generating neurons in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30(20):7111-7120
Chao, R., Nevin, L., Agarwal, P., Riemer, J., Bai, X., Delaney, A., Akana, M., JimenezLopez, N., Bardakjian, T., Schneider, A., Chassaing, N., Schorderet, D.F., FitzPatrick, D., Kwok, P.Y., Ellgaard, L., Gould, D.B., Zhang, Y., Malicki, J., Baier, H., and Slavotinek, A. (2010) A male with unilateral microphthalmia reveals a role for TMX3 in eye development. PLoS One. 5(5):e10565
Carney, T.J., Feitosa, N.M., Sonntag, C., Slanchev, K., Kluger, J., Kiyozumi, D., Gebauer, J.M., Coffin Talbot, J., Kimmel, C.B., Sekiguchi, K., Wagener, R., Schwarz, H., Ingham, P.W., and Hammerschmidt, M. (2010) Genetic analysis of fin development in zebrafish identifies furin and hemicentin1 as potential novel Fraser Syndrome disease genes. PLoS Genetics. 6(4):e1000907
Yamamoto, K., Ruuskanen, J.O., Wullimann, M.F., and Vernier, P. (2010) Two tyrosine hydroxylase genes in vertebrates: New dopaminergic territories revealed in the zebrafish brain. Molecular and cellular neurosciences. 43(4):394-402
Osório, J., Mueller, T., Rétaux, S., Vernier, P., and Wullimann, M.F. (2010) Phylotypic expression of the bHLH genes Neurogenin2, Neurod, and Mash1 in the mouse embryonic forebrain. The Journal of comparative neurology. 518(6):851-871
Kühn, E., and Köster, R.W. (2010) Analysis of gene expression by in situ hybridization on adult zebrafish brain sections. CSH protocols. 2010(2):pdb.prot5382
Arrenberg, A.B., Del Bene, F., and Baier, H. (2009) Optical control of zebrafish behavior with halorhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 106(42):17968-17973
Scott, E.K., and Baier, H. (2009) The cellular architecture of the larval zebrafish tectum, as revealed by gal4 enhancer trap lines. Frontiers in neural circuits. 3:13
Baier, H., and Scott, E.K. (2009) Genetic and optical targeting of neural circuits and behavior-zebrafish in the spotlight. Current opinion in neurobiology. 19(5):553-560
Wyart, C., Bene, F.D., Warp, E., Scott, E.K., Trauner, D., Baier, H., and Isacoff, E.Y. (2009) Optogenetic dissection of a behavioural module in the vertebrate spinal cord. Nature. 461(7262):407-410
Distel, M., Wullimann, M.F., and Köster, R.W. (2009) Optimized Gal4 genetics for permanent gene expression mapping in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 106(32):13365-13370
Seipold, S., Priller, F.C., Goldsmith, P., Harris, W.A., Baier, H., and Abdelilah-Seyfried, S. (2009) Non-SMC condensin I complex proteins control chromosome segregation and survival of proliferating cells in the zebrafish neural retina. BMC Developmental Biology. 9:40
Slanchev, K., Carney, T.J., Stemmler, M.P., Koschorz, B., Amsterdam, A., Schwarz, H., and Hammerschmidt, M. (2009) The epithelial cell adhesion molecule EpCAM is required for epithelial morphogenesis and integrity during zebrafish epiboly and skin development. PLoS Genetics. 5(7):e1000563
Kurrasch, D.M., Nevin, L.M., Wong, J., Baier, H., and Ingraham, H.A. (2009) Neuroendocrine transcriptional programs adapt dynamically to the supply and demand for neuropeptides as revealed in NSF mutant zebrafish. Neural Development. 4:22
Maddison, L.A., Lu, J., Victoroff, T., Scott, E., Baier, H., and Chen, W. (2009) A gain-of-function screen in zebrafish identifies a guanylate cyclase with a role in neuronal degeneration. Molecular genetics and genomics : MGG. 281(5):551-563
Wullimann, M.F. (2009) Secondary neurogenesis and telencephalic organization in zebrafish and mice: a brief review. Integrative Zoology. 4(1):123-133
Mason, L., Scott, E.K., Staub, W., Finger-Baier, K., and Baier, H. (2009) Expression patterns from GAL4 enhancer trap screen. ZFIN Direct Data Submission.
Slanchev, K., Stebler, J., Goudarzi, M., Cojocaru, V., Weidinger, G., and Raz, E. (2009) Control of Dead end localization and activity – Implications for the function of the protein in antagonizing miRNA function. Mechanisms of Development. 126(3-4):270-277
Gosse, N.J., and Baier, H. (2009) An essential role for Radar (Gdf6a) in inducing dorsal fate in the zebrafish retina. Proceedings of the National Academy of Sciences of the United States of America. 106(7):2236-2241
Babaryka, A., Kuhn, E., and Koster, R.W. (2009) In vivo synthesis of meganuclease for generating transgenic zebrafish Danio rerio. Journal of Fish Biology. 74(2):452-457
Lillesaar, C., Stigloher, C., Tannhäuser, B., Wullimann, M.F., and Bally-Cuif, L. (2009) Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish, Danio rerio, using transgenics to visualize raphe-specific pet1 expression. The Journal of comparative neurology. 512(2):158-182
Mueller, T., and Wullimann, M.F. (2009) An evolutionary interpretation of teleostean forebrain anatomy. Brain, behavior and evolution. 74(1):30-42
Nevin, L.M., Taylor, M.R., and Baier, H. (2008) Hardwiring of fine synaptic layers in the zebrafish visual pathway. Neural Development. 3:36
Sumbre, G., Muto, A., Baier, H., and Poo, M.M. (2008) Entrained rhythmic activities of neuronal ensembles as perceptual memory of time interval. Nature. 456(7218):102-106
Del Bene, F., Wehman, A.M., Link, B.A., and Baier, H. (2008) Regulation of neurogenesis by interkinetic nuclear migration through an apical-basal notch gradient. Cell. 134(6):1055-1065
Chi, N.C., Shaw, R.M., Jungblut, B., Huisken, J., Ferrer, T., Arnaout, R., Scott, I., Beis, D., Xiao, T., Baier, H., Jan, L.Y., Tristani-Firouzi, M., and Stainier, D.Y. (2008) Genetic and Physiologic Dissection of the Vertebrate Cardiac Conduction System. PLoS Biology. 6(5):e109
Gosse, N.J., Nevin, L.M., and Baier, H. (2008) Retinotopic order in the absence of axon competition. Nature. 452(7189):892-895
Mueller, T., Wullimann, M.F., and Guo, S. (2008) Early teleostean basal ganglia development visualized by Zebrafish Dlx2a, Lhx6, Lhx7, Tbr2 (eomesa), and GAD67 gene expression. The Journal of comparative neurology. 507(2):1245-1257
Kedde, M., Strasser, M.J., Boldajipour, B., Oude Vrielink, J.A., Slanchev, K., le Sage, C., Nagel, R., Voorhoeve, P.M., van Duijse, J., Andersson Ørom, U., Lund, A.H., Perrakis, A., Raz, E., and Agami, R. (2007) RNA-Binding Protein Dnd1 Inhibits MicroRNA Access to Target mRNA. Cell. 131(7):1273-1286
Xiao, T., and Baier, H. (2007) Lamina-specific axonal projections in the zebrafish tectum require the type IV collagen Dragnet. Nature Neuroscience. 10(12):1529-1537
Campbell, D.S., Stringham, S.A., Timm, A., Xiao, T., Law, M.Y., Baier, H., Nonet, M.L., and Chien, C.B. (2007) Slit1a inhibits retinal ganglion cell arborization and synaptogenesis via Robo2-dependent and -independent pathways. Neuron. 55(2):231-245
Jin, S.W., Herzog, W., Santoro, M.M., Mitchell, T.S., Frantsve, J., Jungblut, B., Beis, D., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Field, H.A., Chi, N.C., Wehman, A.M., Baier, H., and Stainier, D.Y. (2007) A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology. 307(1):29-42
Szobota, S., Gorostiza, P., Del Bene, F., Wyart, C., Fortin, D.L., Kolstad, K.D., Tulyathan, O., Volgraf, M., Numano, R., Aaron, H.L., Scott, E.K., Kramer, R.H., Flannery, J., Baier, H., Trauner, D., and Isacoff, E.Y. (2007) Remote control of neuronal activity with a light-gated glutamate receptor. Neuron. 54(4):535-545
Davison, J.M., Akitake, C.M., Goll, M.G., Rhee, J.M., Gosse, N., Baier, H., Halpern, M.E., Leach, S.D., and Parsons, M.J. (2007) Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish. Developmental Biology. 304(2):811-824
Scott, E.K., Mason, L., Arrenberg, A.B., Ziv, L., Gosse, N.J., Xiao, T., Chi, N.C., Asakawa, K., Kawakami, K., and Baier, H. (2007) Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Nature Methods. 4(4):323-326
Scott, I.C., Masri, B., D'Amico, L.A., Jin, S.W., Jungblut, B., Wehman, A.M., Baier, H., Audigier, Y., and Stainier, D.Y. (2007) The G protein-coupled receptor agtrl1b regulates early development of myocardial progenitors. Developmental Cell. 12(3):403-413
Wehman, A.M., Staub, W., and Baier, H. (2007) The anaphase-promoting complex is required in both dividing and quiescent cells during zebrafish development. Developmental Biology. 303(1):144-156
Smear, M.C., Tao, H.W., Staub, W., Orger, M.B., Gosse, N.J., Liu, Y., Takahashi, K., Poo, M.M., and Baier, H. (2007) Vesicular Glutamate Transport at a Central Synapse Limits the Acuity of Visual Perception in Zebrafish. Neuron. 53(1):65-77
Mumm, J.S., Williams, P.R., Godinho, L., Koerber, A., Pittman, A.J., Roeser, T., Chien, C.B., Baier, H., and Wong, R.O. (2006) In vivo imaging reveals dendritic targeting of laminated afferents by zebrafish retinal ganglion cells. Neuron. 52(4):609-621
Sive, H., Mueller, T., Wullimann, M.F., Kuwada, J.Y., Moorman, S.J., Haendel, M.A. (2006) ZFIN Anatomy Working Group: Nervous System. Manually curated data.
Mueller, T., Vernier, P., and Wullimann, M.F. (2006) A phylotypic stage in vertebrate brain development: GABA cell patterns in zebrafish compared with mouse. The Journal of comparative neurology. 494(4):620-634
Slanchev, K.I. (2006) Molecular mechanisms governing germ line development in zebrafish and the role of this lineage in sexual differentiation. Ph.D. Thesis.
Muto, A., Orger, M.B., Wehman, A.M., Smear, M.C., Kay, J.N., Page-McCaw, P.S., Gahtan, E., Xiao, T., Nevin, L.M., Gosse, N.J., Staub, W., Finger-Baier, K., Baier, H. (2005) Forward Genetic Analysis of Visual Behavior in Zebrafish. PLoS Genetics. 1(5):e66
Gahtan. E., Tanger. P., and Baier, H. (2005) Visual prey capture in larval zebrafish is controlled by identified reticulospinal neurons downstream of the tectum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25(40):9294-9303
Beis, D., Bartman, T., Jin, S.W., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Frantsve, J., Field, H.A., Wehman, A., Baier, H., Tallafuss, A., Bally-Cuif, L., Chen, J.N., Stainier, D.Y., and Jungblut, B. (2005) Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development (Cambridge, England). 132(18):4193-4204
Wullimann, M.F., Rink, E., Vernier, P., and Schlosser, G. (2005) Secondary neurogenesis in the brain of the African clawed frog, Xenopus laevis, as revealed by PCNA, Delta-1, Neurogenin-related-1, and NeuroD expression. The Journal of comparative neurology. 489(3):387-402
Mueller, T., and Wullimann, M.F. (2005) Atlas of Early Zebrafish Brain Development: A Tool for Molecular Neurogenetics. Elsevier Science. :183p
Xiao, T., Roeser, T., Staub, W., and Baier, H. (2005) A GFP-based genetic screen reveals mutations that disrupt the architecture of the zebrafish retinotectal projection. Development (Cambridge, England). 132(13):2955-2967
Chen, P.Y., Manninga, H., Slanchev, K., Chien, M., Russo, J.J., Ju, J., Sheridan, R., John, B., Marks, D.S., Gaidatzis, D., Sander, C., Zavolan, M., and Tuschl, T. (2005) The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes & Development. 19(11):1288-1293
Kay, J.N., Link, B.A., and Baier, H. (2005) Staggered cell-intrinsic timing of ath5 expression underlies the wave of ganglion cell neurogenesis in the zebrafish retina. Development (Cambridge, England). 132(11):2573-2585
Orger, M.B., and Baier, H. (2005) Channeling of red and green cone inputs to the zebrafish optomotor response. Visual neuroscience. 22(3):275-281
Wehman, A.M., Staub, W., Meyers, J.R., Raymond, P.A., and Baier, H. (2005) Genetic dissection of the zebrafish retinal stem-cell compartment. Developmental Biology. 281(1):53-65
Hua, J.Y., Smear, M.C., Baier, H., and Smith, S.J. (2005) Regulation of axon growth in vivo by activity-based competition. Nature. 434(7036):1022-1026
Slanchev, K., Stebler, J., de la Cueva-Mendez, G., and Raz, E. (2005) Development without germ cells: The role of the germ line in zebrafish sex differentiation. Proceedings of the National Academy of Sciences of the United States of America. 102(11):4074-4079
Seiler, C., Finger-Baier, K.C., Rinner, O., Makhankov, Y.V., Schwarz, H., Neuhauss, S.C., and Nicolson, T. (2005) Duplicated genes with split functions: independent roles of protocadherin15 orthologues in zebrafish hearing and vision. Development (Cambridge, England). 132(3):615-623
Baraban, S.C., Taylor, M.R., Castro, P.A., and Baier, H. (2005) Pentylenetetrazole induced changes in zebrafish behavior, neural activity and c-fos expression. Neuroscience. 131(3):759-768
Page-McCaw, P.S., Chung, S.C., Muto, A., Roeser, T., Staub, W., Finger-Baier, K.C., Korenbrot, J.I., and Baier, H. (2004) Retinal network adaptation to bright light requires tyrosinase. Nature Neuroscience. 7(12):1329-1336
Wullimann, M.F., and Mueller, T. (2004) Teleostean and mammalian forebrains contrasted: Evidence from genes to behavior. The Journal of comparative neurology. 475(2):143-162
Mueller, T., Vernier, P., and Wullimann, M.F. (2004) The adult central nervous cholinergic system of a neurogenetic model animal, the zebrafish Danio rerio. Brain research. 1011(2):156-169
Rink, E., and Wullimann, M.F. (2004) Connections of the ventral telencephalon (subpallium) in the zebrafish (Danio rerio). Brain research. 1011(2):206-220
Gahtan, E., and Baier, H. (2004) Of lasers, mutants, and see-through brains: Functional neuroanatomy in zebrafish. Journal of neurobiology. 59(1):147-161
Wullimann, M.F., and Mueller, T. (2004) Identification and morphogenesis of the eminentia thalami in the zebrafish. The Journal of comparative neurology. 471(1):37-48
Kay, J.N., Roeser, T., Mumm, J.S., Godinho, L., Mrejeru, A., Wong, R.O., and Baier, H. (2004) Transient requirement for ganglion cells during assembly of retinal synaptic layers. Development (Cambridge, England). 131(6):1331-1342
Orger, M.B., Gahtan, E., Muto, A., Page-McCaw, P., Smear, M.C., and Baier, H. (2004) Behavioral screening assays in zebrafish. The Zebrafish: Genetics, Genomics and Informatics, 2nd ed., Methods Cell Biol.. 77:53-68
Goldsmith, P., Baier, H., and Harris, W.A. (2003) Two zebrafish mutants, ebony and ivory, uncover benefits of neighborhood on photoreceptor survival. Journal of neurobiology. 57(3):235-245
Loosli, F., Staub, W., Finger-Baier, K.C., Ober, E.A., Verkade, H., Wittbrodt, J., and Baier, H. (2003) Loss of eyes in zebrafish caused by mutation of chokh/rx3. EMBO reports. 4(9):894-899
Weidinger, G., Stebler, J., Slanchev, K., Dumstrei, K., Wise, C., Lovell-Badge, R., Thisse, C., Thisse, B., and Raz, E. (2003) dead end, a novel vertebrate germ plasm component, is required for zebrafish primordial germ cell migration and survival. Current biology : CB. 13(16):1429-1434
Roeser, T. and Baier, H. (2003) Visuomotor behaviors in larval zebrafish after GFP-guided laser ablation of the optic tectum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23(9):3726-3734
Mueller, T., and Wullimann, M.F. (2003) Anatomy of neurogenesis in the early zebrafish brain. Brain research. Developmental brain research. 140(1):137-155
Wullimann, M.F., and Mueller, T. (2002) Expression of Zash-1a in the postembryonic zebrafish brain allows comparison to mouse Mash1 domains. Gene expression patterns : GEP. 1(3-4):187-192
Mueller, T., and Wullimann, M. (2002) BrdU-, neuroD (nrd)- and Hu-studies reveal unusual non-ventricular neurogenesis in the postembryonic zebrafish forebrain. Mechanisms of Development. 117(1-2):123-135
Rink, E. and Wullimann, M.F. (2002) Development of the catecholaminergic system in the early zebrafish brain: an immunohistochemical study. Brain research. Developmental brain research. 137(1):89-100
Mueller, T., and Wullimann, M.F. (2002) Expression domains of neuroD (nrd) in the early postembryonic zebrafish brain. Brain research bulletin. 57(3-4):377-379
Rink, E. and Wullimann, M.F. (2002) Connections of the ventral telencephalon and tyrosine hydroxylase distribution in the zebrafish brain (Danio rerio) lead to identification of an ascending dopaminergic system in a teleost. Brain research bulletin. 57(3-4):385-387
Wullimann, M.F. and Rink, E. (2002) The teleostean forebrain: a comparative and developmental view based on early proliferation, Pax6 activity and catecholaminergic organization. Brain research bulletin. 57(3-4):363-370
Baraban, S., Castro, P., and Baier, H. (2002) Identification of seizure-resistant zebrafish mutants. Epilepsia. 43(7):238
Wullimann, M.F. and Rink, E. (2001) Detailed immunohistology of Pax6 protein and tyrosine hydroxylase in the early zebrafish brain suggests role of Pax6 gene in development of dopaminergic diencephalic neurons. Brain research. Developmental brain research. 131(1-2):173-191
Kay, J.N., Finger-Baier, K.C., Roeser, T., Staub, W., and Baier, H. (2001) Retinal ganglion cell genesis requires lakritz, a zebrafish atonal homolog. Neuron. 30(3):725-736
Rink, E. and Wullimann, M.F. (2001) The teleostean (zebrafish) dopaminergic system ascending to the subpallium (striatum) is located in the basal diencephalon (posterior tuberculum). Brain research. 889:316-330
Wullimann, M.F. (2001) Brain phenotypes and early regulatory genes: the bauplanof the metazoan central nervous system. In Brain Evolution and Cognition, G. Roth and M.F. Wullimann, eds., New York and Heidelberg: Spektrum Akademischer Verlag and J. Wiley & Sons. :11-39
Orger, M.B., Smear, M.C., Anstis, S.M., and Baier, H. (2000) Perception of Fourier and non-Fourier motion by larval zebrafish. Nature Neuroscience. 3(11):1128-1133
Wullimann, M.F. and Knipp, S. (2000) Proliferation pattern changes in the zebrafish brain from embryonic through early postembryonic stages. Anatomy and embryology. 202:385-400
Baier, H. (2000) Zebrafish on the move: towards a behavior-genetic analysis of vertebrate vision. Current opinion in neurobiology. 10(4):451-455
Baier, H. and Copenhagen, D. (2000) Combining physiology and genetics in the zebrafish retina. The Journal of physiology. 524(1):1
Neuhauss, S.C.F., Biehlmaier, O., Seeliger, M.W., Das, T., Kohler, K., Harris, W.A., and Baier, H. (1999) Genetic disorders of vision revealed by a behavioral screen of 400 essential loci in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19(19):8603-8615
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Wullimann M.F., Puelles, L., and Wicht, H. (1999) Early postembryonic neural development in the zebrafish: a 3-D reconstruction of forebrain proliferation zones shows their relationship to prosomeres. Eur. J. Morphol.. 37:117-121
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