ZFIN Lab: Parton Lab

ZFIN ID: ZDB-LAB-130530-1

Parton Lab

PI/Director:	Parton, Robert G.
Contact Person:	Hall, Thomas
Email:	t.hall5@uq.edu.au
URL:
Address:	Level 3 North Institute for Molecular Bioscience The University of Queensland St Lucia Brisbane QLD 4072 Australia
Country:	Australia
Phone:	+61 7 3346 2222
Fax:
Line Designation:	uq

GENOMIC FEATURES ORIGINATING FROM THIS LAB

Show all 18 genomic features

STATEMENT OF RESEARCH INTERESTS

LAB MEMBERS

Lim, Ye-Wheen Post-Doc

Lo, Harriet Post-Doc

Hall, Thomas

ZEBRAFISH PUBLICATIONS OF LAB MEMBERS

Hall, T.E., Ariotti, N., Lo, H.P., Rae, J., Ferguson, C., Martel, N., Lim, Y.W., Giacomotto, J., Parton, R.G. (2023) Cell surface plasticity in response to shape change in the whole organism. Current biology : CB. 33(19):4276-4284.e4

Tromp, A., Wang, H., Hall, T.E., Mowry, B., Giacomotto, J. (2023) Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines. Frontiers in Physiology. 14:12213101221310

Wu, Y., Lim, Y.W., Stroud, D.A., Martel, N., Hall, T.E., Lo, H.P., Ferguson, C., Ryan, M.T., McMahon, K.A., Parton, R.G. (2023) Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2. Developmental Cell. 58(5):376-397.e4

Morgan, K.J., Doggett, K., Geng, F., Mieruszynski, S., Whitehead, L., Smith, K.A., Hogan, B.M., Simons, C., Baillie, G.J., Molania, R., Papenfuss, A.T., Hall, T.E., Ober, E.A., Stainier, D.Y.R., Gong, Z., Heath, J.K. (2023) ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma. eLIFE. 12:

Lo, H.P., Lim, Y.W., Xiong, Z., Martel, N., Ferguson, C., Ariotti, N., Giacomotto, J., Rae, J., Floetenmeyer, M., Moradi, S.V., Gao, Y., Tillu, V.A., Xia, D., Wang, H., Rahnama, S., Nixon, S.J., Bastiani, M., Day, R.D., Smith, K.A., Palpant, N.J., Johnston, W.A., Alexandrov, K., Collins, B.M., Hall, T.E., Parton, R.G. (2021) Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle. The Journal of cell biology. 220(12)

Xiong, Z., Lo, H.P., McMahon, K.A., Parton, R.G., Hall, T.E. (2021) Proximity Dependent Biotin Labelling in Zebrafish for Proteome and Interactome Profiling. Bio-protocol. 11:e4178

Tromp, A., Robinson, K., Hall, T.E., Mowry, B., Giacomotto, J. (2021) Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions. G3 (Bethesda). 11(12):

Xiong, Z., Lo, H.P., McMahon, K.A., Martel, N., Jones, A., Hill, M.M., Parton, R.G., Hall, T.E. (2021) In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish. eLIFE. 10:

Duszyc, K., Gomez, G.A., Lagendijk, A.K., Yau, M.K., Nanavati, B.N., Gliddon, B.L., Hall, T.E., Verma, S., Hogan, B.M., Pitson, S.M., Fairlie, D.P., Parton, R.G., Yap, A.S. (2021) Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion. Current biology : CB. 31(6):1326-1336.e5

Don, E.K., Maschirow, A., Radford, R.A.W., Scherer, N.M., Vidal-Itriago, A., Hogan, A., Maurel, C., Formella, I., Stoddart, J.J., Hall, T.E., Lee, A., Shi, B., Cole, N.J., Laird, A.S., Badrock, A.P., Chung, R.S., Morsch, M. (2021) In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS). Molecular neurobiology. 58(5):2061-2074

Gormal, R.S., Padmanabhan, P., Kasula, R., Bademosi, A.T., Coakley, S., Giacomotto, J., Blum, A., Joensuu, M., Wallis, T.P., Lo, H.P., Budnar, S., Rae, J., Ferguson, C., Bastiani, M., Thomas, W.G., Pardon, E., Steyaert, J., Yap, A.S., Goodhill, G.J., Hilliard, M.A., Parton, R.G., Meunier, F.A. (2020) Modular transient nanoclustering of activated β2-adrenergic receptors revealed by single-molecule tracking of conformation-specific nanobodies. Proceedings of the National Academy of Sciences of the United States of America. 117:30476-30487

Hall, T.E., Martel, N., Ariotti, N., Xiong, Z., Lo, H.P., Ferguson, C., Rae, J., Lim, Y.W., Parton, R.G. (2020) In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation. Nature communications. 11:3711

Hall, T.E., Wood, A.J., Ehrlich, O., Li, M., Sonntag, C.S., Cole, N.J., Huttner, I.G., Sztal, T.E., Currie, P.D. (2019) Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A. NPJ Regenerative medicine. 4:21

de Winter, J.M., Molenaar, J.P., Yuen, M., van der Pijl, R., Shen, S., Conijn, S., van de Locht, M., Willigenburg, M., Bogaards, S.J., van Kleef, E.S., Lassche, S., Persson, M., Rassier, D.E., Sztal, T.E., Ruparelia, A.A., Oorschot, V., Ramm, G., Hall, T.E., Xiong, Z., Johnson, C.N., Li, F., Kiss, B., Lozano-Vidal, N., Boon, R.A., Marabita, M., Nogara, L., Blaauw, B., Rodenburg, R.J., Kϋsters, B., Doorduin, J., Beggs, A.H., Granzier, H., Campbell, K., Ma, W., Irving, T., Malfatti, E., Romero, N.B., Bryson-Richardson, R.J., van Engelen, B.G., Voermans, N.C., Ottenheijm, C.A. (2019) KBTBD13 is an actin-binding protein that modulates muscle kinetics. The Journal of Clinical Investigation. 130(2):754-767

Grassini, D.R., Da Silva, J., Hall, T.E., Baillie, G.J., Simons, C., Parton, R.G., Hogan, B.M., Smith, K.A. (2019) Myosin Vb is required for correct trafficking of N-cadherin and cardiac chamber ballooning. Developmental Dynamics : an official publication of the American Association of Anatomists. 248(4):284-295

Tillu, V.A., Lim, Y.W., Kovtun, O., Mureev, S., Ferguson, C., Bastiani, M., McMahon, K.A., Lo, H.P., Hall, T.E., Alexandrov, K., Collins, B.M., Parton, R.G. (2018) A variable undecad repeat domain in cavin1 regulates caveola formation and stability. EMBO reports. 19(9):

Lim, Y.W., Lo, H.P., Ferguson, C., Martel, N., Giacomotto, J., Gomez, G.A., Yap, A.S., Hall, T.E., Parton, R.G. (2017) Caveolae Protect Notochord Cells against Catastrophic Mechanical Failure during Development. Current biology : CB. 27(13):1968-1981.e7

Nguyen, P.D., Gurevich, D.B., Sonntag, C., Hersey, L., Alaei, S., Nim, H.T., Siegel, A., Hall, T.E., Rossello, F.J., Boyd, S.E., Polo, J.M., Currie, P.D. (2017) Muscle Stem Cells Undergo Extensive Clonal Drift during Tissue Growth via Meox1-Mediated Induction of G2 Cell-Cycle Arrest. Cell Stem Cell. 21:107-119.e6

Voges, H.K., Mills, R.J., Elliott, D.A., Parton, R.G., Porrello, E.R., Hudson, J.E. (2017) Development of a human cardiac organoid injury model reveals innate regenerative potential. Development (Cambridge, England). 144(6):1118-1127

Hall, T.E., Martel, N., Lo, H.P., Xiong, Z., Parton, R.G. (2017) A plasmid library of full-length zebrafish rab proteins for in vivo cell biology.. Cellular logistics. 7:e1301151

Don, E.K., Formella, I., Badrock, A.P., Hall, T.E., Morsch, M., Hortle, E., Hogan, A., Chow, S., Gwee, S.S., Stoddart, J.J., Nicholson, G., Chung, R., Cole, N.J. (2017) A Tol2 Gateway-Compatible Toolbox for the Study of the Nervous System and Neurodegenerative Disease. Zebrafish. 14(1):69-72

Ariotti, N., Hall, T.E., Parton, R.G. (2017) Correlative light and electron microscopic detection of GFP-labeled proteins using modular APEX. Methods in cell biology. 140:105-121

Masselink, W., Cole, N.J., Fenyes, F., Berger, S., Sonntag, C., Wood, A., Nguyen, P.D., Cohen, N., Knopf, F., Weidinger, G., Hall, T.E., Currie, P.D. (2016) A somitic contribution to the apical ectodermal ridge is essential for fin formation. Nature. 535(7613):542-6

Gurevich, D.B., Nguyen, P.D., Siegel, A.L., Ehrlich, O.V., Sonntag, C., Phan, J.M., Berger, S., Ratnayake, D., Hersey, L., Berger, J., Verkade, H., Hall, T.E., Currie, P.D. (2016) Asymmetric division of clonal muscle stem cells coordinates muscle regeneration in vivo. Science (New York, N.Y.). 353(6295):aad9969

Hall, T.E., Ariotti, N., Ferguson, C., Xiong, Z., Parton, R.G. (2016) New Transgenic Lines for Localization of GFP-Tagged Proteins by Electron Microscopy. Zebrafish. 13:232-3

Don, E.K., de Jong-Curtain, T.A., Doggett, K., Hall, T.E., Heng, B., Badrock, A.P., Winnick, C., Nicholson, G.A., Guillemin, G.J., Currie, P.D., Hesselson, D., Heath, J.K., Cole, N.J. (2016) Genetic basis of hindlimb loss in a naturally occurring vertebrate model. Biology Open. 5(3):359-66

Lo, H.P., Hall, T.E., Parton, R.G. (2016) Mechanoprotection by skeletal muscle caveolae. Bioarchitecture. 6(1):22-7

Ariotti, N., Hall, T.E., Rae, J., Ferguson, C., McMahon, K.A., Martel, N., Webb, R.E., Webb, R.I., Teasdale, R.D., Parton, R.G. (2015) Modular Detection of GFP-Labeled Proteins for Rapid Screening by Electron Microscopy in Cells and Organisms. Developmental Cell. 35(4):513-25

Sztal, T.E., Zhao, M., Williams, C., Oorschot, V., Parslow, A.C., Giousoh, A., Yuen, M., Hall, T.E., Costin, A., Ramm, G., Bird, P.I., Busch-Nentwich, E.M., Stemple, D.L., Currie, P.D., Cooper, S.T., Laing, N.G., Nowak, K.J., Bryson-Richardson, R.J. (2015) Zebrafish models for nemaline myopathy reveal a spectrum of nemaline bodies contributing to reduced muscle function. Acta Neuropathologica. 130(3):389-406

Lo, H.P., Nixon, S.J., Hall, T.E., Cowling, B.S., Ferguson, C., Morgan, G.P., Schieber, N.L., Fernandez-Rojo, M.A., Bastiani, M., Floetenmeyer, M., Martel, N., Laporte, J., Pilch, P.F., Parton, R.G. (2015) The caveolin-cavin system plays a conserved and critical role in mechanoprotection of skeletal muscle. The Journal of cell biology. 210:833-49

Morsch, M., Radford, R., Lee, A., Don, E.K., Badrock, A.P., Hall, T.E., Cole, N.J., Chung, R. (2015) In vivo characterization of microglial engulfment of dying neurons in the zebrafish spinal cord. Frontiers in Cellular Neuroscience. 9:321

Berger, J., Hall, T.E., Currie, P.D. (2015) Novel Transgenic Lines to Label Sarcolemma and Myofibrils of the Musculature. Zebrafish. 12(1):124-5

Berger, J., Tarakci, H., Berger, S., Li, M., Hall, T.E., Arner, A., Currie, P.D. (2014) Loss of tropomodulin4 in the zebrafish mutant träge causes cytoplasmic rod formation and muscle weakness reminiscent of nemaline myopathy. Disease models & mechanisms. 7(12):1407-15

Kovtun, O., Tillu, V.A., Jung, W., Leneva, N., Ariotti, N., Chaudhary, N., Mandyam, R.A., Ferguson, C., Morgan, G.P., Johnston, W.A., Harrop, S.J., Alexandrov, K., Parton, R.G., Collins, B.M. (2014) Structural Insights into the Organization of the Cavin Membrane Coat Complex. Developmental Cell. 31:405-419

Nguyen, P.D., Hollway, G.E., Sonntag, C., Miles, L.B., Hall, T.E., Berger, S., Fernandez, K.J., Gurevich, D.B., Cole, N.J., Alaei, S., Ramialison, M., Sutherland, R.L., Polo, J.M., Lieschke, G.J., Currie, P.D. (2014) Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1. Nature. 512(7514):314-8

Acosta, J.R., Goldsbury, C., Winnick, C., Badrock, A.P., Fraser, S.T., Laird, A.S., Hall, T.E., Don, E.K., Fifita, J.A., Blair, I.P., Nicholson, G.A., Cole, N.J. (2014) Mutant Human FUS Is Ubiquitously Mislocalized and Generates Persistent Stress Granules in Primary Cultured Transgenic Zebrafish Cells. PLoS One. 9(6):e90572

Coxam, B., Sabine, A., Bower, N.I., Smith, K.A., Pichol-Thievend, C., Skoczylas, R., Astin, J.W., Frampton, E., Jaquet, M., Crosier, P.S., Parton, R.G., Harvey, N.L., Petrova, T.V., Schulte-Merker, S., Francois, M., Hogan, B.M. (2014) Pkd1 Regulates Lymphatic Vascular Morphogenesis during Development. Cell Reports. 7:623-33

Sztal, T.E., Sonntag, C., Hall, T.E., and Currie, P.D. (2012) Epistatic dissection of laminin-receptor interactions in dystrophic zebrafish muscle. Human molecular genetics. 21(21):4718-4731

Johnson, J.L., Hall, T.E., Dyson, J.M., Sonntag, C., Ayers, K., Berger, S., Gautier, P., Mitchell, C., Hollway, G.E., and Currie, P.D. (2012) Scube activity is necessary for Hedgehog signal transduction in vivo. Developmental Biology. 368(2):193-202

Goldshmit, Y., Sztal, T.E., Jusuf, P.R., Hall, T.E., Nguyen-Chi, M., and Currie, P.D. (2012) Fgf-dependent glial cell bridges facilitate spinal cord regeneration in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(22):7477-7492

Das, D., Tnimov, Z., Nguyen, U.T., Thimmaiah, G., Lo, H., Abankwa, D., Wu, Y., Goody, R.S., Waldmann, H., and Alexandrov, K. (2012) Flexible and General Synthesis of Functionalized Phosphoisoprenoids for the Study of Prenylation in vivo and in vitro. Chembiochem : a European journal of chemical biology. 13(5):674-683

Gupta, V.A., Kawahara, G., Myers, J.A., Chen, A.T., Hall, T.E., Manzini, M.C., Currie, P.D., Zhou, Y., Zon, L.I., Kunkel, L.M., and Beggs, A.H. (2012) A Splice Site Mutation in Laminin-alpha2 Results in a Severe Muscular Dystrophy and Growth Abnormalities in Zebrafish. PLoS One. 7(8):e43794

Nguyen-Chi, M.E., Bryson-Richardson, R., Sonntag, C., Hall, T.E., Gibson, A., Sztal, T., Chua, W., Schilling, T.F., and Currie, P.D. (2012) Morphogenesis and Cell Fate Determination within the Adaxial Cell Equivalence Group of the Zebrafish Myotome. PLoS Genetics. 8(10):e1003014

Cole, N.J., Hall, T.E., Don, E.K., Berger, S., Boisvert, C.A., Neyt, C., Ericsson, R., Joss, J., Gurevich, D.B., and Currie, P.D. (2011) Development and evolution of the muscles of the pelvic fin. PLoS Biology. 9(10):e1001168

Williams, R.J., Hall, T.E., Glattauer, V., White, J., Pasic, P.J., Sorensen, A.B., Waddington, L., McLean, K.M., Currie, P.D., and Hartley, P.G. (2011) The in vivo performance of an enzyme-assisted self-assembled peptide/protein hydrogel. Biomaterials. 32(22):5304-5310

Don, E.K., Hall, T.E., Currie, P.D., and Cole, N.J. (2011) Morphology of pelvic fin loss in a zebrafish strain (Danio rerio). Journal of morphology. 272(5):583-589

Sztal, T., Berger, S., Currie, P.D., and Hall, T.E. (2011) Characterization of the laminin gene family and evolution in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(2):422-431

Rae, J., Fontaine, F., Salim, A.A., Lo, H.P., Capon, R.J., Parton, R.G., and Martin, S. (2011) High-throughput screening of Australian marine organism extracts for bioactive molecules affecting the cellular storage of neutral lipids. PLoS One. 6(8):e22868

Berger, J., Berger, S., Hall, T.E., Lieschke, G.J., and Currie, P.D. (2010) Dystrophin-deficient zebrafish feature aspects of the Duchenne muscular dystrophy pathology. Neuromuscular disorders : NMD. 20(12):826-832

Schieber, N.L., Nixon, S.J., Webb, R.I., Oorschot, V.M., and Parton, R.G. (2010) Modern approaches for ultrastructural analysis of the zebrafish embryo. Methods in molecular biology (Clifton, N.J.). 96:425-442

Jacoby, A.S., Busch-Nentwich, E., Bryson-Richardson, R.J., Hall, T.E., Berger, J., Berger, S., Sonntag, C., Sachs, C., Geisler, R., Stemple, D.L., and Currie, P.D. (2009) The zebrafish dystrophic mutant softy maintains muscle fibre viability despite basement membrane rupture and muscle detachment. Development (Cambridge, England). 136(19):3367-3376

Nixon, S.J., Webb, R.I., Floetenmeyer, M., Schieber, N., Lo, H.P., and Parton, R.G. (2009) A single method for cryofixation and correlative light, electron microscopy and tomography of zebrafish embryos. Traffic (Copenhagen, Denmark). 10(2):131-136

Hill, M.M., Bastiani, M., Luetterforst, R., Kirkham, M., Kirkham, A., Nixon, S.J., Walser, P., Abankwa, D., Oorschot, V.M., Martin, S., Hancock, J.F., and Parton, R.G. (2008) PTRF-Cavin, a Conserved Cytoplasmic Protein Required for Caveola Formation and Function. Cell. 132(1):113-124

Bryson-Richardson, R.J., Berger, S., Schilling, T.F., Hall, T.E., Cole, N.J., Gibson, A.J., Sharpe, J., and Currie, P.D. (2007) FishNet: an online database of zebrafish anatomy. BMC Biology. 5(1):34

Hall, T.E., Bryson-Richardson, R.J., Berger, S., Jacoby, A.S., Cole, N.J., Hollway, G.E., Berger, J., and Currie, P.D. (2007) The zebrafish candyfloss mutant implicates extracellular matrix adhesion failure in laminin {alpha}2-deficient congenital muscular dystrophy. Proceedings of the National Academy of Sciences of the United States of America. 104(17):7092-7097

Hollway, G.E., Bryson-Richardson, R.J., Berger, S., Cole, N.J., Hall, T.E., and Currie, P.D. (2007) Whole-somite rotation generates muscle progenitor cell compartments in the developing zebrafish embryo. Developmental Cell. 12(2):207-219

Hall, T.E., Bryson-Richardson, R.J., Cole, N.J., Currie, P.D. (2005) Muscle stem cells and regeneration in zebrafish models of muscular dystrophies. Mechanisms of Development. 122:S131

Johnston, I.A., Hall, T.E., and Govoni, J.J. (ed.) (2004) Mechanisms of muscle development and responses to temperature change in fish larvae. The development of form and function in fishes and the question of larval adaptation. American Fisheries Society Symp.. 40(1):113-144