Gene

tmem236

ID

ZDB-GENE-070705-455

Name

transmembrane protein 236

Symbol

tmem236 Nomenclature History

Previous Names

si:dkey-32m20.1

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to be located in membrane. Orthologous to human TMEM236 (transmembrane protein 236).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With tmem236 Human Ortholog

No data available

Associated With tmem236 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR020394	Uncharacterised protein family, FAM23-like, transmembrane

Domain Details Per Protein

Protein	Additional Resources	Length	Uncharacterised protein family, FAM23-like, transmembrane
UniProtKB:A5WVU6	InterPro	350
UniProtKB:A0AB32TUY7	InterPro	350

Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 2

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	tmem236-201 (1) Ensembl	Ensembl		1,084 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-32M20	CT027716	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001100079 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:CT027716 (1)	72577 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0AB32TUY7 (1)	350 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	TMEM236	10	Ensembl:ENSG00000148483 Gene:653567 HGNC:23473	Amino acid sequence comparison (1) Phylogenetic tree (1) Conserved genome location (synteny) (1)
Mouse	Tmem236	2	Ensembl:ENSMUSG00000061531 Gene:625286 MGI:1919309	Conserved genome location (synteny) (1) Amino acid sequence comparison (1) Phylogenetic tree (1)

Citations

Include unpublished citations

Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37

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