Gene

cpeb4a

ID

ZDB-GENE-040426-1557

Name

cytoplasmic polyadenylation element binding protein 4a

Symbol

cpeb4a Nomenclature History

Previous Names

cpeb4
zgc:66166 (1)

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have mRNA 3'-UTR binding activity; ribosome binding activity; and translation regulator activity, nucleic acid binding. Predicted to be involved in several processes, including cellular response to glucose starvation; negative regulation of cytoplasmic translation; and response to ischemia. Predicted to localize to several cellular components, including dendrite; messenger ribonucleoprotein complex; and postsynaptic density. Is expressed in cranial ganglion; neurons; olfactory placode; peripheral olfactory organ; and yolk syncytial layer. Orthologous to human CPEB4 (cytoplasmic polyadenylation element binding protein 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:66166 (9 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cpeb4a Human Ortholog

No data available

Associated With cpeb4a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR032296	Cytoplasmic polyadenylation element-binding protein, ZZ domain
Family	IPR034819	Cytoplasmic polyadenylation element-binding protein
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR038446	CEBP, ZZ domain superfamily

Domain Details Per Protein

Protein	Length	CEBP, ZZ domain superfamily	Cytoplasmic polyadenylation element-binding protein	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:A0A8M6Z9E0 InterPro	519
UniProtKB:F1QCY1 InterPro	703
UniProtKB:A0A8M6Z2L6 InterPro	511
UniProtKB:A0A8M3AHT9 InterPro	711
UniProtKB:B2GRL1 InterPro	635
UniProtKB:Q7SXN4 InterPro	635

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cpeb4a-201 (1) Ensembl	Ensembl	4,983 nt	Select Tool
mRNA	cpeb4a-202 (1) Ensembl	Ensembl	5,031 nt	Select Tool ZFIN BLAST
mRNA	cpeb4a-204 (1) Ensembl	Ensembl	915 nt	Select Tool
mRNA	cpeb4a-206 (1) Ensembl	Ensembl	644 nt	Select Tool
mRNA	cpeb4a-207 (1) Ensembl	Ensembl	5,178 nt	Select Tool ZFIN BLAST
mRNA	cpeb4a-208 (1) Ensembl	Ensembl	1,918 nt	Select Tool ZFIN BLAST
mRNA	cpeb4a-209 (1) Ensembl	Ensembl	2,827 nt	Select Tool ZFIN BLAST
ncRNA	cpeb4-002 (1) Ensembl	Ensembl	789 nt	Select Tool
ncRNA	cpeb4-004 (1) Ensembl	Ensembl	545 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations