ZFIN Sequences for Gene: col12a1a

ZFIN ID: ZDB-GENE-090728-1

ZFIN ID: ZDB-GENE-090728-1

SEQUENCE INFORMATION

Gene Name:	collagen, type XII, alpha 1a
Gene Symbol:	col12a1a

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_002665259 (1)	10771 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927619 (1)	10495 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927620 (1)	10386 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_068214688 (1)	10039 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009293296 (1)	10036 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927615 (1)	9930 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_068214689 (1)	9763 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927617 (1)	9760 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927618 (1)	9654 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927623 (1)	7285 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927627 (1)	7009 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_068214690 (1)	6553 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927622 (1)	6550 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927624 (1)	6277 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927625 (1)	6274 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AM941493 (1)	1065 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01022394 (1)	723 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI331630 (1)	476 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI331671 (1)	418 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU693377 (2)	93968 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU929138 (2)	65374 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU694260 (2)	38791 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU855771 (2)	37417 nt	Select Tool MegaBLAST Ensembl
	GenBank:FP101905 (2)	27827 nt	Select Tool MegaBLAST Ensembl
	GenBank:JBMGRA010000017 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl
Polypeptide	UniProtKB:A0AB32TBL0 (1)	3113 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3AJ97 (1)	3112 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M1RKT8 (1)	3067 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32TD50 (1)	3021 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3B2N6 (1)	3020 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32TBF4 (1)	1951 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3AK48 (1)	1950 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:XP_068070789 (1)	3113 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009291571 (1)	3112 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783716 (1)	3072 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_002665305 (1)	3067 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_068070790 (1)	3021 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783718 (1)	3020 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783719 (1)	2980 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783720 (1)	2975 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783721 (1)	2934 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_068070791 (1)	1951 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783723 (1)	1950 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783724 (1)	1905 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783725 (1)	1859 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783726 (1)	1858 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783728 (1)	1813 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:CAQ03443 (1)	355 aa	Select Tool ZFIN BLAST NCBI BLAST

col12a1a CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] CH73-133O19 (1)	Genomic	GenBank:CU929138	65374	Select Tool MegaBLAST Ensembl
[BAC] CH73-213I16 (1)	Genomic	GenBank:CU693377	93968	Select Tool MegaBLAST Ensembl
[FOSMID] CH1073-18E6 (1)	Genomic	GenBank:FP101905	27827	Select Tool MegaBLAST Ensembl
[FOSMID] CH1073-327K3 (1)	Genomic	GenBank:CU855771	37417	Select Tool MegaBLAST Ensembl
[FOSMID] ZFOS-756G12 (1)	Genomic	GenBank:CU694260	38791	Select Tool MegaBLAST Ensembl

col12a1a ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[EST] fa99f12	RNA	GenBank:AI331630	476	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AI331671	418	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT